3300003213: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12

Overview

Basic Information

• IMG/M Taxon OID: 3300003213
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091554 | Ga0008870
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4474255
• Sequencing Scaffolds: 23
• Novel Protein Genes: 23
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004455	Metagenome / Metatranscriptome	437	Y
F009996	Metagenome / Metatranscriptome	310	Y
F010550	Metagenome / Metatranscriptome	302	N
F018729	Metagenome / Metatranscriptome	233	Y
F020383	Metagenome / Metatranscriptome	224	N
F021530	Metagenome / Metatranscriptome	218	Y
F030468	Metagenome / Metatranscriptome	185	Y
F031553	Metagenome / Metatranscriptome	182	Y
F031916	Metagenome	181	N
F033022	Metagenome / Metatranscriptome	178	N
F036481	Metagenome / Metatranscriptome	170	Y
F042196	Metagenome / Metatranscriptome	158	Y
F043380	Metagenome / Metatranscriptome	156	N
F051108	Metagenome / Metatranscriptome	144	N
F052573	Metagenome / Metatranscriptome	142	Y
F054834	Metagenome / Metatranscriptome	139	N
F071771	Metagenome / Metatranscriptome	122	Y
F073508	Metagenome / Metatranscriptome	120	Y
F085318	Metagenome / Metatranscriptome	111	N
F088152	Metagenome / Metatranscriptome	109	Y
F093435	Metagenome / Metatranscriptome	106	Y
F103198	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26313J46564_100021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4171
JGI26313J46564_100025	All Organisms → cellular organisms → Bacteria	3998
JGI26313J46564_100157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2391
JGI26313J46564_100189	Not Available	2250
JGI26313J46564_100242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2065
JGI26313J46564_100288	All Organisms → cellular organisms → Bacteria	1919
JGI26313J46564_100322	All Organisms → cellular organisms → Bacteria	1802
JGI26313J46564_100362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1678
JGI26313J46564_100375	All Organisms → cellular organisms → Bacteria	1647
JGI26313J46564_100384	All Organisms → cellular organisms → Bacteria	1630
JGI26313J46564_100426	All Organisms → cellular organisms → Bacteria	1568
JGI26313J46564_100487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1477
JGI26313J46564_100525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1399
JGI26313J46564_100626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1270
JGI26313J46564_100758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1139
JGI26313J46564_100785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1111
JGI26313J46564_100956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	959
JGI26313J46564_101056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	896
JGI26313J46564_101189	Not Available	810
JGI26313J46564_101365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	724
JGI26313J46564_101397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	709
JGI26313J46564_101654	All Organisms → cellular organisms → Bacteria	616
JGI26313J46564_101910	Not Available	536

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26313J46564_100021	JGI26313J46564_1000212	F020383	MEMRAPFRDDRGLVGKILLVWLLLLAVLVVGAIDAGSILLARSRAADLAKDASVSAAEAXRQNGDEEQAKLAALDTIADADERVRLKRIDVGRREVTVVLVVHADTLVVGRIPFLDDLGRVTVSGSTAVPRD*
JGI26313J46564_100025	JGI26313J46564_1000254	F071771	VRRVLVTSGDPPDADQAGSAGTVYMVQVCNEHDPDPRQSAPLPRPPGSTPIGQRPRRKLYQDPAASAEGRH
JGI26313J46564_100157	JGI26313J46564_1001572	F021530	MTTTALVWLVVGLLSLVAVLVVLIALIRHLFVLGRAAGRFQDEVGPLTREIXELADSASDRSRRLPQDPRSGP*
JGI26313J46564_100189	JGI26313J46564_1001891	F031553	ATRTYLKSEMTLSFSTALXRPIVLAILAVXLAACTSRXQPAGMESMMRPIANGTPTGSPNAIVLRGTFVKLTGFPCHRSDPYVGGETVTFGGSDGSRTTIVTGSANWIGLPATPSAPLGQCRQVAPFTAELPPAARYVVLINDRRLPAVTLAELRAGGLRHTFRLPS*
JGI26313J46564_100242	JGI26313J46564_1002424	F073508	MFIGQVEETGVIEPLVFPRALPADEPVTPQTEPDEPVLEPXAAR*
JGI26313J46564_100288	JGI26313J46564_1002881	F018729	IRGEPLAPILAPRVDGNSTARVKAALCRSSPRTPALPVAAASRRVHRVRFAIRLLVPLTAVALVACSGGDETAPPPLSQRFLTAADAPGTKPDPVETRETTVDFDEFIAVLGPALIDPDEEEMTTVFQEAGFKGAGVDARFFGETHDPHGPHVFSSFIELESEDGATSALGWLETDAMKPCPNSCATRVSSFGVDGIPDARGVHRIATAQDIEVAGTESEQPSDSYWVGFTVGSVVYVMELHGPPGGSVSEEQSQEIASAYYDRLKGN*
JGI26313J46564_100322	JGI26313J46564_1003224	F036481	MATRSASLPIEQTYLAKARLAVLAIVLVAAVVVTIAVAFGRSTAAGGTGLGPVRDYGPVTIQNQPLVVNGSVCGQCR*
JGI26313J46564_100362	JGI26313J46564_1003621	F054834	FRRAIAWSAALCALGLGSVAALVGALDTRRVCVGVIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
JGI26313J46564_100375	JGI26313J46564_1003751	F043380	MAIKGKSKGRSAKAVTPGPKPVYRPVKKRLLAKREFWLVILSILGVVVIGGLVAGFIGERNASAQDDLEQRMRATTSSFQGQIEPVLSTIGQANPPAGYTVFTDLQTAVGTLVAEKPGA
JGI26313J46564_100384	JGI26313J46564_1003841	F009996	VPANAITLQSVISTILTVLVFFVLGAGETDPYKYFYILYAGVTIVWCISTALLFLDIFFAKRAEPERFERERRVPVGWLYLCGVVGFIVNVLAVLFIFVGSWYPTGFPTLAEWNTWMIGFTAVSVISGIVIYVVSQRTRKGKTD
JGI26313J46564_100426	JGI26313J46564_1004263	F031916	IALGACTGDDAGGNGSTASTGPSTTSQVPTPAQTFTGAPGTATYEYANEGLLVTLDLNGSNGTLAVENDSDHDLDPPGLYVEDAVDGHEIDVQVVDSAPVAAGEQASFDVKLDGITVDDIGLLVLLFGADNYGAFVRTA*
JGI26313J46564_100487	JGI26313J46564_1004871	F051108	MDRQTAFLLALGLLILAAAVVSVTGWILFVRDRRAGVAGAKDPEPVPLPSGEGRATLSNDD*
JGI26313J46564_100525	JGI26313J46564_1005253	F042196	MSSREERMALNEAASRRINEGIEQAHKGDPPGRRMTITCECALKSCDRLIEITTPEYQEVRSDATQFAIVPEHLIGDIERIVFENDRFVIVAKRAGTPADVATXTDPRS*
JGI26313J46564_100626	JGI26313J46564_1006261	F010550	VGDRPRRHDEIKGATVLLTGWSEGREREVADALGTISTEPVDLDDVELPFVALPKTTLEKAEAARDLLVEAGGSVDLQDAWVTRDAPRPVAARPTCPFCGSTKTQPYTHA
JGI26313J46564_100758	JGI26313J46564_1007582	F093435	LPVQGLPMPAAWTFRRVGAATAERVSLETARASVPFPIELPSDLPAGFGLASVELVDAGYGAGVTLYLRDEDADAGIGTIRLHLEAASELPPATSADQSSVDIGVLPGRFTPDRSQLEWIDGGLYRSLDAPGLALDELLAIAISIGADEPDG*
JGI26313J46564_100785	JGI26313J46564_1007851	F004455	VPSVQGLSKAQANYRKAENPKFRCAECKFMFPRLSIGGCRYVRGVIHADDTC
JGI26313J46564_100956	JGI26313J46564_1009562	F103198	MMRDHTRIEELIAIRSIGGLDPQEQAELEREMASHGPDCEECRRLENEYGEVAGRLAFALDPVALRPG
JGI26313J46564_101056	JGI26313J46564_1010561	F085318	MGMTGTMKGYGSAARFKAEAAGHRMKDRMLEKRLDRSSEEAEHLRLENQLLRDEVEESRTEHHRILDLLEERMAEQDHGNGHGRSHKGRWMLFLLALGGGAYALMRRMREDGTDRGTGSGAIADA*
JGI26313J46564_101189	JGI26313J46564_1011891	F088152	VPSLTTQSPGAEPVKMILSRCEIHRGCIIEVFFGEKAGGRIPWPDPDLKPDAERDFPGSVPIRLAHLPRDGNAKARRAISTLTVEVAELQEENKKLLDQLVAAGFRNDELAQALQEVPPILRR*
JGI26313J46564_101365	JGI26313J46564_1013651	F052573	ARALAAAPVFAIVLFAACSTGETQVQGGSTSPTGPTETGPTATGPTGTTAEAGLGGAVQLDLSQVDNSTGATMFSCDGVEGTWTYDPGQLDIEGVEITMEPAQVDMSGGTGTLVISGQVQLPGAGGAGFTDTVKLRITGTADAPALEAAGVHVEATGALQGVPIDLAQFFPEKLAIPIVAGAPQC*
JGI26313J46564_101397	JGI26313J46564_1013971	F052573	ARALAAAPVFAIVLFAACSTGETQVQGGSTSPTGPTETGPTATGPTGTTAEAGLGGAVQLDLSQVDNSTGATMFSCDGVEGTWTYDPGQLDIEGVEITMEPAQVXMSGGTGTLVISGQVQLPGAGGAGFTDTVKLRITGTADAPALEAAGVHVEATGALQGVPIDLAQFFPEKLAIPIVAGAPQC*
JGI26313J46564_101654	JGI26313J46564_1016541	F033022	VFWEDAARLADALGPAARRDLLRVLTSPSHVRADLIRQLHERPDGQEMADLLIFLEE
JGI26313J46564_101910	JGI26313J46564_1019101	F030468	MSTKAGTLGFSERPALFTFWTVAVSTLAASALILSAVALNVAGRDAQPVTSVEGSGTHEASIGATLWDAGKLEAMKGRVLAESARIQDYAPLWDAGKLEAMRGRVLAESVRIQDYAPLWDAGKLEAMKGRV