3300003146: Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS28

Overview

Basic Information

• IMG/M Taxon OID: 3300003146
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0061995 | Gp0051689 | Ga0051080
• Sample Name: Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS28
• Sequencing Status: Permanent Draft
• Sequencing Center: Washington University in St. Louis
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 89417576
• Sequencing Scaffolds: 16
• Novel Protein Genes: 16
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Washington University At St. Louis, Missouri, Usa, Of Twins
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Huma Fecal → Human Fecal Microbial Communities From Washington University At St. Louis, Missouri, Usa, Of Twins

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Washington University at St. Louis, Missouri, USA
• Coordinates
  • Lat. (^o): 38.63549
  • Long. (^o): -90.264891
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F052660	Metagenome	142	N
F056309	Metagenome	137	N
F062845	Metagenome	130	N
F067845	Metagenome	125	N
F068855	Metagenome	124	N
F071325	Metagenome	122	N
F074899	Metagenome / Metatranscriptome	119	N
F076189	Metagenome	118	N
F087334	Metagenome	110	N
F089005	Metagenome	109	N
F090513	Metagenome	108	N
F092228	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0051080_1006576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	13811
Ga0051080_1007625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	24782
Ga0051080_1008751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	45809
Ga0051080_1009721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	848
Ga0051080_1009846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16127
Ga0051080_1009963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11261
Ga0051080_1010006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10371
Ga0051080_1012386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8499
Ga0051080_1012631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	7684
Ga0051080_1012964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4491
Ga0051080_1013846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18992
Ga0051080_1014429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2505
Ga0051080_1014541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	53311
Ga0051080_1014621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5215
Ga0051080_1020226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1200
Ga0051080_1020832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3444

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0051080_1006576	Ga0051080_100657616	F068855	VPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYHGSDLHYHVNVSAALSEGGTVW*
Ga0051080_1007625	Ga0051080_100762532	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESS
Ga0051080_1008751	Ga0051080_100875130	F092228	MKKKCTLVLISVLTVACIVFAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNNGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGSNLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTV*
Ga0051080_1009721	Ga0051080_10097211	F067845	MKHWKNLLVCLLAGVLALGCSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNHFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR*
Ga0051080_1009846	Ga0051080_100984610	F052660	MCILRVLPENTPEKIGQEWAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFACWWPATAGHSRSADALPGKSNF*
Ga0051080_1009963	Ga0051080_10099631	F071325	ALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAVRFPAAFLLVHRFYLVFEELLSCATAYL*
Ga0051080_1010006	Ga0051080_10100063	F042936	VYDLWGRGGGKGRVWKSKEGIMKTSGIVDRGEDTIRNFEKVEQEGALAPPYLGKVYFRSRLRGKS*
Ga0051080_1012386	Ga0051080_101238610	F076189	VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL*
Ga0051080_1012631	Ga0051080_10126318	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC*
Ga0051080_1012964	Ga0051080_10129642	F090513	MLKIFAIAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY*
Ga0051080_1013846	Ga0051080_10138469	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTCAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0051080_1014429	Ga0051080_10144293	F062845	MEKTPFIVHEKFRSDNNEQRKEHFQKKFERYIVDELSNTVPSKSCA*
Ga0051080_1014541	Ga0051080_10145413	F029444	MDVSGQLTGFELEDLMTWTVSNLQRPFREDFSLEKSGIIAEKGSQIFGCRFVGFDGPKKAAPFFNF*
Ga0051080_1014621	Ga0051080_10146212	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ*
Ga0051080_1020226	Ga0051080_10202263	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSNKTL*
Ga0051080_1020832	Ga0051080_10208321	F056309	MWNAVRNTKRVRSTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD*