3300003145: Marine sediment microbial communities from deep subseafloor - Sample from 0.8 mbsf

Overview

Basic Information

• IMG/M Taxon OID: 3300003145
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111471 | Gp0097515 | Ga0052243
• Sample Name: Marine sediment microbial communities from deep subseafloor - Sample from 0.8 mbsf
• Sequencing Status: Permanent Draft
• Sequencing Center: Japan Agency for Marine-Earth Science and Technology
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 48697521
• Sequencing Scaffolds: 29
• Novel Protein Genes: 32
• Associated Families: 31

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	21
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Deep Subseafloor
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → oceanic subsurface zone → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Northwestern Pacific Ocean
• Coordinates
  • Lat. (^o): 41.1773
  • Long. (^o): 142.2013
  • Alt. (m): N/A
  • Depth (m): 1180.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000777	Metagenome / Metatranscriptome	895	Y
F002336	Metagenome / Metatranscriptome	569	Y
F002344	Metagenome / Metatranscriptome	568	Y
F007721	Metagenome / Metatranscriptome	346	N
F007772	Metagenome / Metatranscriptome	345	Y
F008559	Metagenome	331	Y
F016475	Metagenome	247	N
F022658	Metagenome / Metatranscriptome	213	Y
F024682	Metagenome / Metatranscriptome	205	Y
F025922	Metagenome / Metatranscriptome	199	Y
F028773	Metagenome / Metatranscriptome	190	Y
F030363	Metagenome	185	Y
F035608	Metagenome / Metatranscriptome	171	Y
F036312	Metagenome	170	Y
F039194	Metagenome	164	Y
F041211	Metagenome / Metatranscriptome	160	Y
F043422	Metagenome / Metatranscriptome	156	N
F045851	Metagenome / Metatranscriptome	152	Y
F047978	Metagenome	149	Y
F051963	Metagenome / Metatranscriptome	143	N
F059442	Metagenome	134	Y
F059633	Metagenome	133	Y
F064209	Metagenome	129	Y
F065403	Metagenome	127	Y
F073054	Metagenome / Metatranscriptome	120	Y
F078165	Metagenome	116	Y
F080857	Metagenome / Metatranscriptome	114	Y
F094881	Metagenome	105	Y
F095568	Metagenome / Metatranscriptome	105	N
F096594	Metagenome	104	Y
F106177	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0052243_1004862	Not Available	1346
Ga0052243_1007930	Not Available	1151
Ga0052243_1008195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64	1130
Ga0052243_1008385	Not Available	1116
Ga0052243_1008461	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1110
Ga0052243_1009855	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	986
Ga0052243_1012044	Not Available	720
Ga0052243_1015443	Not Available	854
Ga0052243_1018016	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	832
Ga0052243_1019462	Not Available	825
Ga0052243_1020631	Not Available	820
Ga0052243_1021025	All Organisms → cellular organisms → Bacteria	818
Ga0052243_1023066	Not Available	811
Ga0052243_1023299	Not Available	810
Ga0052243_1025464	Not Available	803
Ga0052243_1027065	Not Available	798
Ga0052243_1029913	Not Available	791
Ga0052243_1034225	Not Available	779
Ga0052243_1037246	Not Available	771
Ga0052243_1037373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	771
Ga0052243_1037890	All Organisms → cellular organisms → Bacteria	769
Ga0052243_1039294	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	765
Ga0052243_1039405	Not Available	765
Ga0052243_1039650	Not Available	764
Ga0052243_1039852	Not Available	764
Ga0052243_1043393	Not Available	752
Ga0052243_1046011	Not Available	742
Ga0052243_1047344	Not Available	736
Ga0052243_1049244	Not Available	725

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0052243_1004862	Ga0052243_10048622	F065403	MATEISQPIFGASTMPFPSEATIEPFWVFGEITTLGGKTRRDVMARKYKYTLRWSLMSVTDYDNLEAVINALVAATFTYEKWPHSTSGVSCLGTLSARRLEYGAGDTNYLSSVTLILTEVSAR*
Ga0052243_1007930	Ga0052243_10079303	F043422	MDKITDILQEKADGILTEGTLKAIENAFNKKVSLHVEAALVKQDDEYSAKLEHLLEAIDVDHTGKLDKVIAAIDKNHGQKLINVVEKYSSAINEEAVTFKKDVVHKVSKYLDIYLEKLVPQRSINEAVKNRRSAKVIHEMRKVLAVDAALQKDSIKEAIIDGKSRIEMSTNKLNESSAMLERLQKENALLKSRITLEERTSDLSGDKANFCRKVLNGKSAKFITENFDYTLKMFDKNHEEHLEVLHEQAKSQNTITKDVDRPVIEER
Ga0052243_1008195	Ga0052243_10081951	F045851	MTLQDHNTITELITFYLEQRNKSDYKKGMEPIHGYKIHALLISNAIDSQKKDLNIY*
Ga0052243_1008385	Ga0052243_10083852	F007721	MKPIRSNELEFFKELIKDKFYDKQEQINSEIHFEADKLAEKKKSTFAKECGVDKDLKQLDKVNQQYLDFIRTKSVVEQKLLDKVNQVANAVSNRLERLSKARQWDSHFDGFNAKEDGVEYFTNKLDEVCYQEAKEHIKKGHKLYHALKEKRDNCKVIVHTGSDINSTVKTLQKEMASADIRLAIPDQLLQIAVK*
Ga0052243_1008461	Ga0052243_10084612	F007772	MCTKSYTLLKISWRIFDKHYTKLNDEQKSKVLDIYYDFY*
Ga0052243_1009855	Ga0052243_10098551	F041211	MTTIEKIALEEFDMEYYQLGENEKQWCHDEMVNNNKWLNPPYESEVDKWGF*
Ga0052243_1012044	Ga0052243_10120441	F028773	YLYLFFNLNYNILIKYIGHRMLPFETKPIEKVKNEIHLINQNINKIKMDLISMKADISIIKDYINQQKNKDAKALKKQEISKGWIW*
Ga0052243_1012470	Ga0052243_10124702	F002344	MLYDKLKPHIKAKMKENAEEYKTVNWLFDTLKQKNNYSDLTIDEIRSICTFGDVWYYDLTQRDIIWGEWLTNK*
Ga0052243_1015443	Ga0052243_10154431	F094881	MLKWKRVSSGTLTLNAEVLVDMLAGMSGKNRRITKISFTPTQYKYLRVYRDAEQIVDYDSYTLNGEFPVLDMDLPLAEGQQCKVGFYNSSGATTAIQIMIGYTED*
Ga0052243_1018016	Ga0052243_10180161	F059633	MDSKTENDPFDLNFSKKVRVKEFLVFMESEDGQEYYVIKKFEHTKEQNLEVLKFIQKIIESDPDINSGRLKGYLKQQRLFIKRYLKEVNKNPNEI*
Ga0052243_1019462	Ga0052243_10194621	F035608	ASPAVDPLILLVGAQIYCPSVPENVDLKVKPAISFFTRGGTSTPYIPGIISPSVQFDCWAIKYDGELFPASQRAREVYRALYDALQGIQNITVGAYKILSAIEEVQGQDLVDVEIPNYFRTLTFFEIMIRAE*
Ga0052243_1020631	Ga0052243_10206314	F016475	MHKPIYKTYAIDSADIVRMSAQGHSENESLEFCKMDLINDQARKQIKDYWNLKK
Ga0052243_1021025	Ga0052243_10210252	F002336	MPTVIYPGGMKKFPYNAPGKAQAHEYAKLMKGKIKNNPNYGMEKQNTSSY*
Ga0052243_1023066	Ga0052243_10230662	F080857	MSAREKGEETFLAKVHKGWRITVYEPVRESLGLEVGDRLRVTVRKE*
Ga0052243_1023299	Ga0052243_10232992	F036312	MKHKLTHSLYEAKKVQKDLYEVCTTNYWNNGTHTVKDISHHATEREAQEQKEINKHKNQIK*
Ga0052243_1025464	Ga0052243_10254642	F047978	SAMAGEVTEFKPRPAVVQAGSDSYVGILLSEEDFRKILQDKINNNAKIAECDLNGRVCTRLQDVYKSSIKNLEEIIEKDNTWFRRNKGALGLLSGILVGVGTSIAIVRAVYPGQ*
Ga0052243_1027065	Ga0052243_10270653	F073054	MKVAFEAQIMQNNIKSLRSMDKQAHLTLEYSAEENDLIDGINKLHSAEKTVIVVIMDKKESATIEKK*
Ga0052243_1029913	Ga0052243_10299131	F051963	VALSNLPLVNKAGIVTYLKDVAKVQTPIIEVSSTFPSEDDNIAYGLYVDDVTDNGRSINQLGVQSCASMYNAEDQFNILYISFQNDPQAPVILNSINNLAANVNFFDGYTSVEFDRDVTIGQRSEIHNYTFTLTRLEFN
Ga0052243_1029913	Ga0052243_10299132	F022658	WWPAYCDTVMGATLYSNLPNGQMISAFNPNLLIKNDQTLIRLDTFMATKIFYESIVSDTSNVNSVDAANYGHALERYEKEWEKALQLMNFYDLNQDAPDGPTTKLEENWVADPDFFNNNRRWF*
Ga0052243_1034225	Ga0052243_10342251	F039194	RKVDFLEGIPPFQCVNVGALAAVTASPRTLVPNLEMPDNEFGLFRWYPIDDAQIRLFHPSGIAKWQLRNLQVPVDMNIVNRDPNLVSTEIAVWQNNRPSIEAINGHAFDLGAVRLIALGYRFHTLDLEGTGKGADPDLVKALKTGAQPCTHVWASGRGIGD*
Ga0052243_1037246	Ga0052243_10372462	F095568	MAQSNAQKQLQQYDTDIAVLKVEFKNLDTKFDTALQDVKADIKVNSDLIREGNASTHKMLNDFQKSNQASHDDMAVKITALERWRWMLIGA
Ga0052243_1037373	Ga0052243_10373732	F000777	MKRREFICLFGAMAAAWSIAAYAQESATSGTTASLPQIELARVKPVDQMPPNVRLSDDLIDLMKAFSLSSAEGIGRAWGGPLRPPTPFDERFGQWETRLWPK*
Ga0052243_1037890	Ga0052243_10378901	F106177	MDNVLKKLEEQILDEYLSLVQRIQPQLEKHFFYDVMPPWEDFKEYRLEELAHKNK*
Ga0052243_1039294	Ga0052243_10392942	F078165	MPYIRDRDFARINELVLTIKQLSEKEGYVSIPDIAARALKIMDRYIVEAEEEE*
Ga0052243_1039405	Ga0052243_10394053	F080857	MVIGLEENKETFLAKIHKGWRVTIYEPIRDSLGLEIGDRLRVTVWKDKVKR*
Ga0052243_1039650	Ga0052243_10396501	F096594	MAYIVIMGSFPAHVGMEVGKKFLELEKLPDFIKTEHVFNAAAGDYTFFTIYKIEDDSKYFDALKAITKRFSGYMDIVGYKYTVYPVLEAKDALSMVGLG*
Ga0052243_1039852	Ga0052243_10398521	F059442	MRKEDRFKPYIYKVYNSIGKLEEYSRYYRTKKEALDWYNTQGKWLEKLLNRELILIDTDINLFTYVPR
Ga0052243_1043393	Ga0052243_10433931	F025922	MAGRNRIIYGSQSVWCNGRVLYRVQTLGSTTTFTSEDIFELGKLDIIDVVDDVPAVAVTLNTNDFGDPMTMAVLAQVPEAKLDMNLTASGSLAGTGPTNANLVVVSGTDLTEVGPYLHGACLADFAIVCGNLPGVSLWAPVQDECDLGSTALTTDIDQTLFMDEVFVNSLEFGYTTGANATENY
Ga0052243_1046011	Ga0052243_10460111	F024682	NSANNLKHLAQLNLVQWR*ETLNTEDELISKLKQEIGKALPPMFAGMAENMLESNKDVIIKWLKDNKDLVKEVIES*
Ga0052243_1047007	Ga0052243_10470071	F064209	MSKEDLVPFKKGQSGNPNGRPKKIETVLKDHFLAEHNVRLTKSQTQDIVKTLLSKTRSELMELAKDESLPFWV
Ga0052243_1047344	Ga0052243_10473442	F030363	CQRPLTHKWGSGQVLERISRQLGRPDVAFGKTDGIPDSILAIDKNTGYEWNCLPFLDNNFEFGYWDPPYDHLYKKEGQEIWRVCKRLAILHTYIWPRAWLIGGSREAMIAITMGPMKQIRCLQVFIKGNEVDGDKE*
Ga0052243_1049244	Ga0052243_10492441	F008559	FYIKYYATKYGEMIERKGQLDGVAKGEYITKKGHPCFNYLDIWATEKFGSPQYRNASVKWEFNDTSTLNVNHIDSILN*