3300003141: Marine sediment microbial communities from deep subseafloor of Shimokita Peninsula, Japan - 107 mbsf

Overview

Basic Information

• IMG/M Taxon OID: 3300003141
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111471 | Gp0097592 | Ga0052246
• Sample Name: Marine sediment microbial communities from deep subseafloor of Shimokita Peninsula, Japan - 107 mbsf
• Sequencing Status: Permanent Draft
• Sequencing Center: Japan Agency for Marine-Earth Science and Technology
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 34967503
• Sequencing Scaffolds: 49
• Novel Protein Genes: 51
• Associated Families: 38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	47
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Petrotogales → Petrotogaceae → Petrotoga → Petrotoga mobilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Deep Subseafloor
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Shimokita Peninsula, Japan, in Northwestern Pacific
• Coordinates
  • Lat. (^o): 41.1773
  • Long. (^o): 142.2013
  • Alt. (m): N/A
  • Depth (m): 1180.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008850	Metagenome	327	Y
F015949	Metagenome	251	Y
F022979	Metagenome / Metatranscriptome	212	Y
F023034	Metagenome / Metatranscriptome	211	Y
F024933	Metagenome	204	Y
F024951	Metagenome	203	Y
F029110	Metagenome / Metatranscriptome	189	N
F029940	Metagenome / Metatranscriptome	187	Y
F029984	Metagenome	186	Y
F030981	Metagenome	183	Y
F034976	Metagenome	173	Y
F039194	Metagenome	164	Y
F042912	Metagenome / Metatranscriptome	157	Y
F043408	Metagenome	156	N
F046170	Metagenome / Metatranscriptome	151	Y
F049284	Metagenome	147	Y
F050887	Metagenome	144	Y
F056273	Metagenome	137	Y
F058676	Metagenome	134	Y
F061823	Metagenome	131	Y
F069658	Metagenome	123	Y
F069660	Metagenome / Metatranscriptome	123	Y
F070873	Metagenome	122	Y
F071959	Metagenome / Metatranscriptome	121	Y
F074370	Metagenome / Metatranscriptome	119	Y
F076658	Metagenome	118	Y
F078009	Metagenome	117	Y
F083668	Metagenome / Metatranscriptome	112	Y
F085585	Metagenome / Metatranscriptome	111	Y
F087951	Metagenome	110	Y
F088254	Metagenome	109	Y
F088833	Metagenome	109	N
F089823	Metagenome	108	Y
F091295	Metagenome / Metatranscriptome	107	Y
F094881	Metagenome	105	Y
F098316	Metagenome	104	Y
F102405	Metagenome / Metatranscriptome	101	Y
F104424	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0052246_1000012	Not Available	6686
Ga0052246_1000419	Not Available	2315
Ga0052246_1000610	Not Available	2036
Ga0052246_1000656	Not Available	1989
Ga0052246_1001074	Not Available	1685
Ga0052246_1001089	All Organisms → Viruses → Predicted Viral	1679
Ga0052246_1001221	Not Available	1599
Ga0052246_1001531	Not Available	1495
Ga0052246_1001875	Not Available	1405
Ga0052246_1002503	Not Available	1265
Ga0052246_1002673	Not Available	1225
Ga0052246_1002728	Not Available	1214
Ga0052246_1003025	Not Available	1145
Ga0052246_1003058	Not Available	1140
Ga0052246_1003115	Not Available	1129
Ga0052246_1003587	Not Available	1018
Ga0052246_1004427	Not Available	844
Ga0052246_1004517	Not Available	832
Ga0052246_1004541	Not Available	829
Ga0052246_1004721	Not Available	811
Ga0052246_1005526	Not Available	670
Ga0052246_1005809	Not Available	517
Ga0052246_1006166	Not Available	1507
Ga0052246_1006361	Not Available	1443
Ga0052246_1006959	Not Available	1294
Ga0052246_1007762	Not Available	1155
Ga0052246_1009751	Not Available	900
Ga0052246_1010978	Not Available	777
Ga0052246_1011370	Not Available	739
Ga0052246_1012187	Not Available	637
Ga0052246_1012979	Not Available	522
Ga0052246_1015386	Not Available	870
Ga0052246_1016136	Not Available	857
Ga0052246_1018629	Not Available	831
Ga0052246_1020145	Not Available	819
Ga0052246_1020731	Not Available	815
Ga0052246_1020745	Not Available	815
Ga0052246_1021415	Not Available	810
Ga0052246_1023422	Not Available	797
Ga0052246_1027884	Not Available	767
Ga0052246_1028387	Not Available	763
Ga0052246_1030473	Not Available	746
Ga0052246_1030616	Not Available	745
Ga0052246_1030816	Not Available	743
Ga0052246_1031890	Not Available	732
Ga0052246_1032069	Not Available	730
Ga0052246_1032960	Not Available	719
Ga0052246_1033054	Not Available	718
Ga0052246_1034077	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Petrotogales → Petrotogaceae → Petrotoga → Petrotoga mobilis	702

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0052246_1000012	Ga0052246_10000129	F098316	MSILRAEIIAKIRKGIREGIPRTRLYNELRAVGPVTRKTTFLADYRNVAGVERVEGALRFVRKDRYPTEKTMAAVTWETSKEYMYKVKVQSVLRIGEPITERFVNIMSDVPMTPAMIETEVKERWGEWEKYTAEEITGLQVWSAVRKVME*
Ga0052246_1000419	Ga0052246_10004193	F089823	MCLDKLKELGVSTASEWASAMGYETHNALAKVIRRILNDMPDKIRVNSNRKPRYYRAL*
Ga0052246_1000610	Ga0052246_10006101	F030981	MGKVRRCDRRCHNAKKPRCRCWCGGAFHGVDGAGAVNREALAQGMTGLLEQHGFKEGETAYIEQRRLPLEVANVY
Ga0052246_1000656	Ga0052246_10006561	F058676	VKERIIRMDLTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPSE*
Ga0052246_1001074	Ga0052246_10010742	F070873	MAWGGSLNEEGSDHLRNLREADKVIKFLEKFKEDLNDNEKKLISNAIEIIVEHFTKNS*
Ga0052246_1001089	Ga0052246_10010893	F024933	MLRYKRITTPTLTDGKETIIELLSCPTGKKYRIVSISTAPYADMYLRVYRQAEQIVDAASIIMTTAAPLLPMDLPLNVGQVVKAGFYNDGAVSTDPKQITIGYRDD*
Ga0052246_1001221	Ga0052246_10012213	F046170	MIRIQDFGEIGYGGLVTLTEWWDNKRIDEGKIGTGDVFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDLPRFAYGLTKALGAGGRRGRGSESKAVDQAQKILNERLRAKALTQGSGRTAERSYQREFETVAPHAF*
Ga0052246_1001531	Ga0052246_10015312	F104424	LNEEENQFLEFLHYQINQKNRFENVVRKIPMFKSMIQEGHKTILKMIDKFENIRRREVYGMLVHEFNNMNQKN*
Ga0052246_1001875	Ga0052246_10018754	F058676	VKERIIRMELTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDK
Ga0052246_1002503	Ga0052246_10025031	F071959	MASRSYLINSNDMSLMDKRNYRMTALAAGLQRCGEKGIGNINADIPGLAGIPPAEMDRRVATIKAYIETGKWPTTIDQRELAPLTDFVAGAPAAQDFWVTPALAVVGTVYTCLNALLAYTFPAGRLMVCYGVSVDVAVLPISRLIFRRGSAVGNIQAQFDMQPMGTRLETAAFFSEPVVIDPQDPFAIQVLCNIIAGATPVHIDNFLFEIAGTTTA*
Ga0052246_1002503	Ga0052246_10025032	F046170	MIRIEDFGEIGYGGLVTLTEWWDNKRIDEGKIGTGDVFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDLPRFAYGLTKALGAGGRRGRGSESKAVDQAQKILNERLRAKALTQGSGRTAERSYQREFETVAPHAF*
Ga0052246_1002673	Ga0052246_10026732	F056273	MVKWKDRMKEWGGGDLTFLSSDGEVIIFVVVDEPQLLKGKFKGNPQERIGCPVVTDEGFVLFITGKRVARKLSKFEDRFKDAAFMVVRHGESGDINASYEVSLFDNEAKTAQLFAIAKKEYKPPMLKQAIKDAKEVMAG*
Ga0052246_1002728	Ga0052246_10027281	F024951	MRKVTVKLEMRIVMLVDEGVEISEVVNELDYQVNDTTTAADILDTEITDYEVVDSK*
Ga0052246_1003025	Ga0052246_10030252	F030981	MGKIRRCSSRCHSAKGTRCRCWCGGFFHGKDGAGAANREALAQAVSEELLKQHGFKEGETAYIEQKKLPLEVA*
Ga0052246_1003058	Ga0052246_10030582	F024951	MRKVTVKLEMRIVMLVDEGVEISGVVNELDYQVNDTTTAADILDTEITDYEVVDSK*
Ga0052246_1003115	Ga0052246_10031153	F029984	TYMRTNIVIDDELKEKWWEIKREADRLKMKIGDYIIFCHDLRKKMVNKEKILEILENPLSDGVKNVDAIQASKSMWKS*
Ga0052246_1003587	Ga0052246_10035871	F008850	MAISKRAKGRFSIMSASEKASVKKAAKLLFDCELMGVKRMRDIVRWAEKR*
Ga0052246_1004427	Ga0052246_10044271	F056273	GEVLIFVVVDEPILLVGKFKGKEQERIGCPVVTDEGFALFITGKRVGRKLSKFEDRFKDTAFMVTRHGEAGDINASYDVGVFDNAEKTEQLFAIAKREYKPALLKEAIKDANEVMAT*
Ga0052246_1004517	Ga0052246_10045172	F098316	LLLRLSPLQNSYRLRPVLADYRNVAGVERVEGALRFVRKDRYPTEKTMAAVTWETSKEYMYKVKVQSVLRIGESITERFVNIMSDVPMTPAMIETEVKERWGEWEKYTAEEITGLQVWSAVRKVME*
Ga0052246_1004541	Ga0052246_10045411	F098316	MAIERAIVIAKMRGAFREGLAASRFIKDMRDIGLSYRRTDMLADWRSVNELERKEGVLRYVRKDRYPTEKTIAAVTWETSKEFMYKVKVQSVIRIGEPITERFVNIMSDVPMTPAMVEAEVEERWGEWEKYEAEIITGLQTWSAVRKVME*
Ga0052246_1004721	Ga0052246_10047211	F061823	MVMKQENIRLINQIEVNYFLHRIKKNFPNFVAGVITDNNGFAIGSDISKRLWIQENKLALWAISKNKENKDILNDPNLVQLKFDIDKGKQFKLFILLEKSKNNRNRVKPLKTLIKSQELF
Ga0052246_1005526	Ga0052246_10055261	F069658	MTEDVSEEVKKEIFRLICVPGIEVEDISDIVNKDYNTQLNYEKVMKILSNEYMKHNLDFGRRLCCRF*
Ga0052246_1005809	Ga0052246_10058091	F050887	SDSTPEYLKFFGEIKFAEERSLSASDFESSLKSYFSKEKKLPQGRYKFAELNNSSTKDFEDSFYSYFE*
Ga0052246_1006166	Ga0052246_10061662	F088254	MNEKILKEILQELKDIHFHLDELSIFYKFVNRVEMKKEEVKKEIVEDKK*
Ga0052246_1006361	Ga0052246_10063613	F083668	MKWTPDKVTTLILIVGCLVLLFTGRDGEVKSILTVAAGWLFGTGYMDIKRGGK*
Ga0052246_1006959	Ga0052246_10069593	F022979	SSGTTYVSNDIDISAYTDPSNGRVLVVDKAMISFSRATGGPIRATDIDAVIGERSMGAQALSETQTALVDLNNNAMFLKSNLYASNTVNDAGGAGVYGVMEQTDALNPAEFVSGFIIPTDKIHCGIDAGVAWTTELDVGFLFEVHTEKLSLRRIQELLVSLTAN*
Ga0052246_1007762	Ga0052246_10077623	F034976	MSEAKPVRCQKCGKPLGYVTVLAKGLLGLQQPLQKVKLVAICMECSQKR*
Ga0052246_1009751	Ga0052246_10097511	F015949	MSDKKYTFGQPSLMKAIEPGQKASIKFLDQPKVVDTEWGEKYSVTILLLSHPLYSITSPKGIKMSWQTNAKVIKDLVACLEENNKEFLKDYLDMTWELSVAEDGSYWLNA*
Ga0052246_1010978	Ga0052246_10109781	F023034	MNVNLYNTTDYERKRDWTLGENKPNSNPNKPNLRKAKMNVNSLITKGYRKKDDFAVRINKPNFRKGQK*
Ga0052246_1011370	Ga0052246_10113701	F078009	MAREKIYLTPDQLNRLKGLDADIVWLREEIRRAEYVGIDIADLKTRFEKTTSIRERMIEEYSK*
Ga0052246_1012187	Ga0052246_10121872	F069660	PIILTLVKEFETPGFGAEKKKVILDSIGLFYDKLAESNALPITKEKLLGVAGSFIDIAVAFFNVVGWFKHKGPTDST*
Ga0052246_1012979	Ga0052246_10129792	F091295	KLDKATRVCTKYLERLIDKKFQLALKVKQPSTPRVDLSKIEVKLDSLQKQIDGLKPKIDASYSFVQERDEREIYLNALTEKAEKIIDDMKEHFEELYKSGYYKEGQKRKIREEGLFKKGGKVMGVEK*
Ga0052246_1015386	Ga0052246_10153862	F042912	MKWTPDLIIALVLIVGCFVLLGLGIDSEVKSILTVAAGWCFGSQYQVRRQKVLSPGTKE*
Ga0052246_1016136	Ga0052246_10161362	F085585	LTLKGLNGTDISEKIRLFEKEMSKCLSKALDTEVPMQYNEQFFATTIFCPTLTSDMRGSNNVEICAVESFDIPDYSDNDAALTSLGSLSIPDEDRESTWKFQEMYNDYINQHSKQDASRLGGSYGIQEGVSILPQSRTIEAEVVTSLPAASKDSYGADSRL*
Ga0052246_1018629	Ga0052246_10186292	F056273	MAKWKEKMKEWGGGDLTFLSSDGEVILFVVVDEPQLLKGKFKGNPQERIGCPVVTDEGFVLFITGKRVARKLSKFEDRFKDAAFMVVRHGEAGDINASYEVTLLDNEAKTEQLFTIAKKEYKPALLKQAIKDAKEVMTN*
Ga0052246_1020145	Ga0052246_10201451	F076658	ARKEIELPEGVVTKVRVRFPPGPRGQVFTAVFQGTHKMWPRGEGNYAWGDDEPIVMDEHMRNITGWHYFLEGYAPLTSYDHTIWWDFNVIEMEHAESMERLTTKLDKFFKDMGLW*
Ga0052246_1020731	Ga0052246_10207311	F049284	MSYRTKTQKKNAMKAINSKAMKLFASGSISMKDADSIARIMKTRMKQL*
Ga0052246_1020745	Ga0052246_10207451	F088833	FAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGAAVADYVLMAWLWI*
Ga0052246_1020745	Ga0052246_10207453	F043408	WLMKVRKEVSLMVETAHIANGMENFSQWVRIGLRSYGLKEDIATQSMRVVRYRKACLHLASTLIDYATQVDPNYRGNVEELIAKALNQTTLEEFE*
Ga0052246_1021415	Ga0052246_10214152	F029110	MNQKISELLKENASNVANSETGSKKDIGGKKEVSKAWKEIQKKIKQIDAKFYEIIKDR*
Ga0052246_1023422	Ga0052246_10234222	F074370	MADEMAEKLAEAKKKMFGAQQPAGKVIILVKGDSLIQSKDPKVEVRQLE*
Ga0052246_1027884	Ga0052246_10278841	F094881	MLKWKRVLSETLDLNQERLTPILAGMSGKNRVIKKISTTPTADKYLRVYRDAEQIVDFDSFTLDGVVPIIDMDLPLAEGQQCSVGFYNSAGVTTKIEIMIAYEETG*
Ga0052246_1028387	Ga0052246_10283871	F087951	MSDSENPIDRELFLEKFEKLSLKIEQLTSEISKMKEKLDKTNKFNRSFGLEALRNSKPLGFAREIHGIKSPTKRYILSIRTVSELWKGRKNDFLIAIRQQEKQTQKDLKALGIRIPIDDMKNLTTLAREVLSMLYISSELKGIEITEILREMISQINKEGQSMVREVKQNMVL*
Ga0052246_1030473	Ga0052246_10304732	F039194	MPDLYIFKTQVGMFDPVALQNHNVCIHYVHKAYYRKVDFLEGIPPFQCIDITAGLGLPAVTPSGRVNIANLEMADNEFGLWRWYPIDDAQIRLYHPAGISKYQLRNLQVPVDMNILFRDPNLVSTEIAVWQNNRPAVEAINGHAFALGAVRLIAIGYRFHTVDLESGKE
Ga0052246_1030616	Ga0052246_10306161	F056273	KDWGGGDLTFLSSDGECLLFVVVDEPVLLEGKYKGNPQERIGCPVVTDEGFVLFVTGKRTARKLSKFEDRFKDAAFIVTRHGESGDINSKYDVSLLDDKVKVEQLFLLAKKEYKPAMLKQAIEDAKEVMKG*
Ga0052246_1030816	Ga0052246_10308161	F071959	MASRNYLINSNDMSLMDKRNYRQTALAAGLQRCGEKGIGNINADIPGLAGILPAEMERRVAMIKAYIDTGKWPTTIDQRELAPLTDFVIAAAQDFWVTPALAAVGTVYTCLDAQLQYTFPAGRLMVCYGVSVDVAVLPISRLIFRRGSAVGNIQAQFDMQPMGTRLETAAFFSEPVVIDPQDPFAIQVLCNIIAGATPVHIDK
Ga0052246_1031890	Ga0052246_10318901	F102405	EGESMAQEVNLLDPLGIAKAVRGQVNQMATQAKLPQLPELPTIKVSMAGLPLLNQFNQIPDRPGISRGDRAG*
Ga0052246_1032069	Ga0052246_10320691	F029940	MSSYESNVEELFLEKFEKLALKVEQLTDEISKMKNKLDKNYKLNRTFGLKTIRNSEPLEFAKDIMGIGSPTKRYLLSLRAITEEWKGRKNDILLTIRQQEQETHLDLKALGIRIPINDIKNISLLAKEILSLLYISCDLHGTSINEILRDIITEINENGYKMVQEIKQKMVF*
Ga0052246_1032960	Ga0052246_10329603	F074370	MADEMAEKLAEAKKKMFGAQQPAGKVIILVKGDSLIQSKDPKVEV*
Ga0052246_1033054	Ga0052246_10330542	F102405	MAQEVNLLDPLGIAKAVRGQVNQMATQAKLPQLPELPTIKVSMAGLPLLNQFNQIPDRPGISRGDRAG*
Ga0052246_1034077	Ga0052246_10340771	F069660	MGLTNILKLLGIVGGIIPIILTLIKEIEIPGWGKEKKQAILDAISLFYDKISEGNTLPITKEKLLGIAGGFVDIVVGFFNLVGWFKHGSPTVSS*