3300003140: Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS29

Overview

Basic Information

• IMG/M Taxon OID: 3300003140
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0061995 | Gp0051690 | Ga0051081
• Sample Name: Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS29
• Sequencing Status: Permanent Draft
• Sequencing Center: Washington University in St. Louis
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53705938
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
Not Available	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Washington University At St. Louis, Missouri, Usa, Of Twins
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Huma Fecal → Human Fecal Microbial Communities From Washington University At St. Louis, Missouri, Usa, Of Twins

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Washington University at St. Louis, Missouri, USA
• Coordinates
  • Lat. (^o): 38.63549
  • Long. (^o): -90.264891
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F078822	Metagenome	116	N
F087334	Metagenome	110	N
F087336	Metagenome	110	N
F088921	Metagenome	109	N
F089053	Metagenome	109	Y
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0051081_1005528	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1706
Ga0051081_1005583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	30158
Ga0051081_1006411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5510
Ga0051081_1006802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1251
Ga0051081_1007490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3827
Ga0051081_1007509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	10821
Ga0051081_1007819	Not Available	3579
Ga0051081_1007873	All Organisms → cellular organisms → Bacteria	3762

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0051081_1005528	Ga0051081_10055281	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0051081_1005583	Ga0051081_100558314	F087336	MVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQIQVAFLEIAF*
Ga0051081_1006411	Ga0051081_10064112	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFVNRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIF*
Ga0051081_1006802	Ga0051081_10068021	F088921	LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSK*
Ga0051081_1007490	Ga0051081_10074904	F089053	LFAFGSRNGCVVDECRTAKGCIRKWLYIFANGQLKLSTAKEATVKNMEVSL*
Ga0051081_1007509	Ga0051081_10075096	F087334	MASRYPFVGSAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKNFFLYRASALFEYREKHP*
Ga0051081_1007819	Ga0051081_10078191	F078822	ILFVKHFFDIFLSFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0051081_1007873	Ga0051081_10078731	F078822	NAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL*