3300003099: Fresh water viral communities from Lake Needwood, Maryland, USA - June 2007

Overview

Basic Information

• IMG/M Taxon OID: 3300003099
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063260 | Gp0097865 | Ga0052239
• Sample Name: Fresh water viral communities from Lake Needwood, Maryland, USA - June 2007
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2568096
• Sequencing Scaffolds: 45
• Novel Protein Genes: 61
• Associated Families: 59

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	16
Not Available	21
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → Planctomyces bekefii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	1
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fresh Water Viral Communities From Lake Needwood, Md
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Fresh Water → Fresh Water Viral Communities From Lake Needwood, Md

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Needwood, Maryland, USA
• Coordinates
  • Lat. (^o): 39.121
  • Long. (^o): -77.129
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F000821	Metagenome / Metatranscriptome	876	Y
F001129	Metagenome / Metatranscriptome	768	Y
F002036	Metagenome / Metatranscriptome	600	Y
F003153	Metagenome / Metatranscriptome	504	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003456	Metagenome / Metatranscriptome	485	Y
F003660	Metagenome / Metatranscriptome	474	Y
F003748	Metagenome / Metatranscriptome	470	Y
F004786	Metagenome / Metatranscriptome	423	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0052239_100025	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	718
Ga0052239_100082	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	650
Ga0052239_100089	Not Available	1171
Ga0052239_100335	Not Available	598
Ga0052239_100419	Not Available	2410
Ga0052239_100597	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1038
Ga0052239_100643	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	839
Ga0052239_100656	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → Planctomyces bekefii	652
Ga0052239_100822	Not Available	1176
Ga0052239_100828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	669

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0052239_100025	Ga0052239_1000251	F061657	MAAPFTLIVAGVTGAGAGGDLLTFPAPSATTTPYVDLGSLSLTLSGDGGGGSMTFDVIETKTPSGTTPWWRSGGVYDNARVQFFDSRYSATTPLFLGYISGIDAVMLENGVGTRATVSVEDADGWLSKTIIRNGTTGIRATSFVDSFTLGSSTSTDRDIINGLLARVHTLVNDATTRQILNTAVISGSTRAIYTGS
Ga0052239_100082	Ga0052239_1000822	F044983	MSDEVWASIERKIKGHYLAAQNLPSACPECANILEPVDFGVDPQTNERLWVTHCCGKWDKYLEVLGPADLI*
Ga0052239_100089	Ga0052239_1000892	F095420	MTPKIGPSTIAMLTGAVVVMVAFIDTWAEGSPNLWLAAISAGLTAMLGVLRSWQAVASEKGDKQ*
Ga0052239_100335	Ga0052239_1003351	F009888	MAVIFDLTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGITFTNIATGAAYTFASGSVTLTKQYSAQGILSILNPAAYGTAANIRVTVSFTVGTDVRRFGPLEIEVLAP*
Ga0052239_100419	Ga0052239_1004192	F018171	MALYDAAGNLVVTGYVAPDVESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTLNFIPSGASTANALLAASLPDVNGTCVITGAPIIEIGGYPDAINAATGNRWIYAGGGSIKTTQTGKATGTITLKRYTNLTASGAATNL*
Ga0052239_100419	Ga0052239_1004193	F006107	MNGVAPRAEKALVDYLASGDWSGAGAGTPSFLTSYSRGLYDDPDEQDTMPNFPRVVVSSTAARPIQRTDLTCEVDIEIELQLSADDTDEADVLTTVAALDSLILPLFDENGASVLDAGISSESGPFTAQFATPSDFGASSISNRSRTFTRSITLFCSATL*
Ga0052239_100419	Ga0052239_1004195	F005024	MRPVVNMTVDTSRFDAAMKAYLLQTSRDLHKAVNSRFFFLMVRLFVLVPPKSPQAERTRIGDYLSKPLGDINRISKKTGKRIGKSRLLRRVHLIAQARERKAGRRGLYGVEMKQAASRVYRKAIGSVGYLRSGVVKAIRIFNRGFSQFKAPKWKPLVKPPGYKPPAKPNSALVALANQYGLPEENVAVHKGTKARGFQAVPGWNPTASVVMSTGIADNXSAESSASCRAPCRRPTTTSLRN*
Ga0052239_100419	Ga0052239_1004196	F009398	QPDPCFGRLLHLLMTTIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAITDANTPVAGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLQREDSGFVLLENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLDLGAKTK*
Ga0052239_100470	Ga0052239_1004701	F003456	VTVIAGETYILELKNRATLSLPEFWREAQVEALNYAKARGLGEVPLSYVVVKRRNASIDQAWVIQDLTQWLKEKQ*
Ga0052239_100597	Ga0052239_1005971	F097213	MISNLLEVVGGALVIAGLALLSLPLGLIALGAALAAIGYTLGDRK*
Ga0052239_100643	Ga0052239_1006432	F036677	DISAEREMMRAGVVVEGQFDSNYDQLRLGFLKGSNPTAFKRLASFATLNAARTLQKPMRDKAPKGQTGKLRKKVLARKARFNNPAAVVGIKGGRNGVFYGWLVVGGTGNRRTTVNGTFAVKPVQKRPFVDEVVKQRSNIDRAVESYSKTVAAFFNDEPFRNTILKFKRGNQR*
Ga0052239_100656	Ga0052239_1006561	F048933	GAYREFNGYFTVAITNADITERKVIPSGLATLSGASTYVGNAAVESAVLAVSVEVFQSRIAPGGQIEGVDFTTVSPYRLGRSLFNRVSGLLGPFIDTDSMVQ*
Ga0052239_100822	Ga0052239_1008221	F009147	STEYSMGREGFALVTATTAQTGNYSALIPTEPTVFTSITGYQISGTWTSKTIPAGFPLVGNITGFQISSGSVVAFLARS*
Ga0052239_100822	Ga0052239_1008222	F038227	MIANGIALNRLFPGQAGGTDLPVLRRDLLQEDEFFVLQEDGTGKIVITFGTFDSLLREDAGFLFREDDGKLQIQSN*
Ga0052239_100828	Ga0052239_1008281	F005585	MAIRDTVYYAFTKSRDNSVFSSETQLTLHSFLSRQNSAEWWKVQSARIRISISLDTPLSWLSPDFRHQKLGMTLSLTRNSNNHQWCDYCKSRWGQLKDGTWHLKAQVPAVWKVVSETPNRRGQVRFYCQSCANEAQNWPDGTFWSLKEQLTYAIDQFAGREKLDVELP*
Ga0052239_100828	Ga0052239_1008282	F056187	MSNYLDDYVSVQDRLKEFIGDHPDYRIKTHVLEESLTPNCDVYIVKTELYRTE
Ga0052239_100858	Ga0052239_1008582	F009524	MTDLTILDAIAARLTALTPPTGYALRKAYATPPESLPVVPAAILFPGDDSITVGNGNRTTVLTVAIRVYLLPIPRMDEKYRDLYTWRAWLRTAFDGAVTISGNAVQVAVTATTLGTDTYADQEYLTVEATAEVTVYDTVAFTA*
Ga0052239_101470	Ga0052239_1014701	F011387	MAAKAITAKDYFTNLVEYTGTALTAVDDWMEVPAQSPSYTFAVTVTGGANFQLALECSFNGNGNWFTIDNGKTINSNGQYVYFYDGKPAAKIRVRISSISSGTPSVVPHIAVAYHG*
Ga0052239_101532	Ga0052239_1015322	F059896	MARVTVSGYLMPRYLCAFHASELCESIGDTAGAVKFAQLIAGDKVSA*
Ga0052239_102175	Ga0052239_1021751	F010464	MSAGGVVAWFTKGRFESESLQVKQAQAVLAMWQATAEAQNKELVELRNEVVSLRQRLEEMEHTIHELQSENAQLKNLS*
Ga0052239_102540	Ga0052239_1025402	F003212	MKDRYLVTLEIETYDGDPREWDWEKLSTGEDVIKIIETQFKGRVLPGEGEGNE*
Ga0052239_102540	Ga0052239_1025403	F000821	MNKEYLEAKFDLCINQAEKNIQEEEIALAIANLRRANSALSQLFGFEEGGDI
Ga0052239_103015	Ga0052239_1030151	F036592	ATETWANASNIGLGEIDPGEYTMSSRQLTDAVISSVANQIASSALGYFYEDANGLISYADASHRQDYLTANGYTDLDAGTAIGPGIGIVQRQGDLVNKVVIDYGNNFGSQYTAQDAESQAIYGLYAEQFSSYVKSASDVEDMADRLIQLRAFPSYQFQSITFPLQSPEIDDTDRDALXTSLWVCQCESPTYRLKCLAANLLAMSKAGRLGRQWEGLA*
Ga0052239_103015	Ga0052239_1030152	F005480	MATTTNYGWETPDDTDLVKDGALAMRTLGNSIDTSLAELRGGTTG
Ga0052239_103072	Ga0052239_1030721	F048273	MTPRQIDGLIERLDSHSQKLDEVRSDVDRIKGGLVVIGALLFSVLIPLLASLLSK*
Ga0052239_103072	Ga0052239_1030722	F093778	MDAELQALDAAMAAAAVHGWQIILLDQIEGVWTAIASDKIDGDPLLTGTGATRTDALLALTAALESR*
Ga0052239_103209	Ga0052239_1032092	F006139	MAVEIVVALIGGCFLVLVALIGKIGSDNKKDHGKVHQVLGRIEQKIDHHVENHQ*
Ga0052239_104288	Ga0052239_1042882	F012570	MQTIIVDGTTYKVKFDRDPIELAKAARKPYRPKKPKDIRKFPLWTESVSTAEYIRRFDVLNFLQAVQYAGASAETAAQYDPTIPLCEVFNDD*
Ga0052239_104288	Ga0052239_1042883	F095133	MTNATAAAGTSGRPYPHYLERVDVLLDDTWWSIWVDFEPADPSVGLPATAWLVHAHVAEHYADIADYLSESTIKRLEAEAVDYLSEGR*
Ga0052239_104555	Ga0052239_1045554	F004786	MPNETILQQIRTPLATALSTVAGNVYSFVPETVIPPAVVVVPDSPYLEFETISKTNVRAKINFTISVAVPTTATQHRSTISSN*
Ga0052239_104636	Ga0052239_1046365	F018135	MTVERVRHSGAYVISEIVGEGARGYLFTQTYYGYTLKQAKAQFKIALKEAN*
Ga0052239_104636	Ga0052239_1046366	F011484	MQELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRLLNLPQIMRERAS*
Ga0052239_104636	Ga0052239_1046368	F003212	MQDRYLVTLEIETYDGDPRAWDWSTLLGYEDKVKVIETQFKGRVLPEEGEGNE*
Ga0052239_104636	Ga0052239_1046369	F000821	MNREYLEAKFDLCINQAEIDLQQEEIARAIANLRRANSALTQLFGFEEEDQ*
Ga0052239_106148	Ga0052239_1061481	F012773	MKGPTIMIGLLGKPREFREMEGGLLDESGECPLATQDETINKGNKQKAILTARYGPSEGEEKCGNCEYGMKLKGCGLGKDEVFCDVYEFRCSKENVCDAYESMEEYEEEGED*
Ga0052239_106317	Ga0052239_1063171	F010758	GVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQVAQDFISALTNDPSEDWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPFGHSVCEIPT*
Ga0052239_106317	Ga0052239_1063172	F001129	MLGQGGTMEFVDAAVTGRNYDFLVVNTAATFTTLTGTGSENLLTAYALSGKSVSAGIVISGRNGGKITAVTPSAGSVIGYTFL*
Ga0052239_108644	Ga0052239_1086441	F003748	IMFQVNRKEASSRYIDTEGNFQVTLVKVEENLDPKGREVCKLTFKTDDGASISDRFINQENVWFRVNQLVAATNHNVPDGTQVDFLGVKGSYANFLKAMIGLELVITTKFEEYESNGEKKKAVRLKNMKPVATSESEEKPF*
Ga0052239_108816	Ga0052239_1088161	F015329	VTKRAKLNDLTAPAAEAKSFDQWFFAQPKKVQDKMRESGVLPYREMVPSKHVFAIDPNNRAWATSDAPVERTEVDAFISRDHVGVMLKGFIDALACSGSYQIRRHVELV
Ga0052239_109135	Ga0052239_1091351	F033015	MSPEDTHTIRADIRELRDELSKVVDLQRETNRRLGKLEGRVFDLEIWRARLQGAAATSRVVWLLAGGA
Ga0052239_109137	Ga0052239_1091371	F081066	VEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFQAFGAEITLKEGSITPNYEEDEVYADLKAQMKAREELLKIAFRQAGKTAIFDESTGEQVPVVXPRPPKRP*
Ga0052239_109203	Ga0052239_1092032	F017972	VRTRHLQLVSSEHSDTTSNRESVRSHFGPVNPASTTLLAQETLRANQEAQLLELLNSLENVVENLNYKSFTLYDTLNTVIEEVSAVL
Ga0052239_109266	Ga0052239_1092662	F082341	MASVMAGDREAAGAIAGMQDVYGRPLPDRGQAIRGVTGGKRWSGMCAHSDQIRVIVEIEPDVFLTVSPADIEID*
Ga0052239_109272	Ga0052239_1092723	F085348	MSQPTGIALKVTGKDGHVSFPAYEAWGWDKVNEIIAGTYAIEHVAKVEIVDVNIKEGM*
Ga0052239_109306	Ga0052239_1093062	F002036	TYNATETWANALNQGIGQVDQPGLYTMSSRSADPDTVYNIASFIADSAFGYLYEEPNGDIGYADADHRQTYLAANGYVDLDAKHALAQGLSTITRSSDIRNDIYINYGNNFNSQATASSPVSIGLYGYKSQSIQSAIHSAINAQEVADRYIAQRAFPLAAFQSITFPITNSAIDDNDRDNLLGVFMGQPLNIQNLPTQISSGVFEGYVEGWQWRTRFNELFLTINLSPIAFSQVAMRWNSVPITETWQTIDQTLTWEYATIVS*
Ga0052239_109499	Ga0052239_1094991	F006262	VFTFTVAIKRSYLRAVYSALGGSTLLAALSAKSIAASSVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLLNDYDLAVYYLGQDGISNPTDAQIYNKLMTVVLIAATSYGGDFSNFRREGTFRTGIT*
Ga0052239_109506	Ga0052239_1095062	F101019	MRVHSFNDGFDAATAGGAPAGEREMLPDGTHGVTIREASEGPHKFADNNPGDFLHLTLAPNGSYGFVWVSLGSSAKDKSLAGVLATALGFTPDGWADADPSELVGRELRVTTKQVVLKSGKTRVFVNDYLPAVATAPAPERKPAARLPAQKVAAARGGEAGSGDDIPFMWMLPLALAVASMGGLA*
Ga0052239_109557	Ga0052239_1095571	F003153	MPVVVNGVKQLQKAMREVEPELNKQMVKDIKTAMLIVRDTARGYLPQQSEVLSGWGKGTASIDTIRDPKKLFPPYDYAQARTKIAYSAGQNKRSNKGFRAAFYVYNNSRSGAIFETAGRLNKPRGNRSLNPNAPAQFNAAAEMLSSMKGQGMQRGRLIYRAWFEKSNKVIPAVVSAINTVATDFNKKTQLRKAA*
Ga0052239_109564	Ga0052239_1095643	F010611	WRRKNIRAKSTTQHIEMPLTPDTTAIEQEGPYRPEEAAQPVDTATAATDSPQGAYERQKEIERAAYDLAVQALRGRRADAARLVAIHATAAKNLTSSRDEVIAQAEKERRLVSGDWVRKVMQEHDGAVSSLLKAMPKQLSGRIAPHDPEHAERELSRWVQEVALKTLHNTDPWKA*
Ga0052239_109711	Ga0052239_1097112	F013890	MGHLEFYNETTGEWTDLEDVPLFDTINCQLCNEPTQAHDIVAEIKFKDDQPIVGAWQCRKCKAVNG*
Ga0052239_109742	Ga0052239_1097423	F018914	MAKQDKFTVLRAWVAEAQTVMGLDHWEVTIVEAASDVDAWADIEAHAQQPTADLRVAFDFWKQEPEKQRLILTHELLHLVLARYARISENLEDSLGKLAWAVIEPQLEDGEERTIEHLARIIAPYLSLPAFPKA*
Ga0052239_109742	Ga0052239_1097424	F068576	ASEHRGVPTEQREFQQACAAWSLKLGVKLNALFNLMPQFGKSIHWARERYYGGTFVTDADLYWINARVNDESEIEHSAKLQRYAAAVDLMCRVCAGDEETTPSCWDQTCPLRPVSPLPLRVYK*
Ga0052239_109790	Ga0052239_1097901	F009126	MATTVLSGSPQAATPVYNKMLFKVSGSLTAQPNYRYVCDVKNPAGTTLARLKCDKLPTTSYGFFGVAKVVETLIAPTKPSLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVQTGTVTTLSGNVAFAGNLEQLELATWSGGLYFPSGAIVNDTTRMLTTPTTRTVYA
Ga0052239_109811	Ga0052239_1098112	F024063	MTLEQAIYLFIGLSMASWLLLMRIDDMKQSYYWRGRKDGFDMHRRMIQNKVKTDEVFDYDKN*
Ga0052239_109814	Ga0052239_1098141	F003660	MNHETKAKLKAALATGYIMLTACLGIAFFGRFIFALLTN*
Ga0052239_109886	Ga0052239_1098862	F031490	MNAAGAVSPSSVVGSVLGTDLIVDHNISASGIVDNSAFLVAPGSVYVWESPTTNLRVNVLTSGEVEINLYGYLAIYVAKSGKGVRKYNLT*
Ga0052239_110014	Ga0052239_1100141	F006982	SIAKNTTTDYTILKSANLSNYTNRYDQFSLALAVVETGLAFVQTEAIGFNTYANSITYNVYAGGIFDPTFDQTFN*
Ga0052239_110017	Ga0052239_1100172	F020681	MVKFRCNFCSANTDFEWLDGYETHEGFRTYQCLKCCAVGVKNEAEAIDTQEPVMRCTKCGSWMFADKECFTCAILTMKEITK*
Ga0052239_110035	Ga0052239_1100351	F000141	FLWLDKLDTPEGFKAYQCMDCGCVGIKNVVEALHIPDSDISRCDKCGSWKFAAVVCHTCQLIGAK*
Ga0052239_110078	Ga0052239_1100781	F019118	IYAESCDRWLGAINSHRLQHGGQDELTQQTLSAAKLPYGDGSWIIGRRASRVAVCAAVASALATYFATQARNGN*
Ga0052239_110089	Ga0052239_1100894	F028151	MNTWLELRDLGLDVAAVMLAIGFIYWIVYEIRDTAFQNGYWKGRAHGWEMHRRMTNIKAQSDEVFDYDKN*