3300002956: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - 250m_A/KNORR_S2/LV

Overview

Basic Information

• IMG/M Taxon OID: 3300002956
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110176 | Gp0088371 | Ga0008059
• Sample Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - 250m_A/KNORR_S2/LV
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 149469971
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
Not Available	13
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9983
  • Long. (^o): -44.9998
  • Alt. (m): N/A
  • Depth (m): 220

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F005684	Metagenome / Metatranscriptome	393	Y
F013096	Metagenome / Metatranscriptome	274	Y
F020712	Metagenome	222	Y
F027203	Metagenome	195	Y
F034217	Metagenome	175	N
F050430	Metagenome / Metatranscriptome	145	N
F059336	Metagenome	134	Y
F066858	Metagenome / Metatranscriptome	126	N
F070217	Metagenome / Metatranscriptome	123	N
F080484	Metagenome	115	N
F083802	Metagenome / Metatranscriptome	112	N
F089404	Metagenome / Metatranscriptome	109	Y
F090504	Metagenome	108	N
F094002	Metagenome	106	Y
F095628	Metagenome	105	Y
F097500	Metagenome / Metatranscriptome	104	N
F098016	Metagenome / Metatranscriptome	104	N
F099438	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26059J44795_1000134	All Organisms → cellular organisms → Archaea	12704
JGI26059J44795_1000438	All Organisms → cellular organisms → Bacteria	7540
JGI26059J44795_1000681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6249
JGI26059J44795_1003215	Not Available	2846
JGI26059J44795_1003251	All Organisms → cellular organisms → Archaea → Euryarchaeota	2828
JGI26059J44795_1011116	Not Available	1357
JGI26059J44795_1013657	Not Available	1202
JGI26059J44795_1024714	Not Available	856
JGI26059J44795_1030859	Not Available	759
JGI26059J44795_1034044	All Organisms → cellular organisms → Archaea	720
JGI26059J44795_1038870	Not Available	671
JGI26059J44795_1038993	Not Available	670
JGI26059J44795_1039460	All Organisms → cellular organisms → Archaea	666
JGI26059J44795_1040108	Not Available	660
JGI26059J44795_1047297	Not Available	604
JGI26059J44795_1048004	Not Available	600
JGI26059J44795_1054439	Not Available	563
JGI26059J44795_1054961	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	560
JGI26059J44795_1058205	All Organisms → cellular organisms → Archaea	544
JGI26059J44795_1067155	Not Available	506
JGI26059J44795_1068048	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26059J44795_1000134	JGI26059J44795_10001347	F005684	VYDTEESPLSAMQVVRRKSEVREGRLCNRNEPRQAHCEPARGRFPERGWNEQPRRSKSKQVRKASTGPGRTHS*
JGI26059J44795_1000438	JGI26059J44795_10004384	F083802	MEEKITITKSKIQKDKVGHSKWLKHKESRFNTLFPKRLEKVNLTIRSLSKLSNRNNYSYEXNNIITGLSSIVFELRELAASYGLDSQDIKYPLAGQQTEPTLTRADAKNNDAKDIASELLEIIEKKIKTEEKLHSEINTLKRELSFLRDKVENQQWSSTRNFT*
JGI26059J44795_1000681	JGI26059J44795_10006818	F090504	MEIFVILTIIFGLILPYWAGVMAKRKGKSFVLWCILQLLFFFPIVLIAFHSPIEKKK*
JGI26059J44795_1003215	JGI26059J44795_10032156	F097500	MNRLEAVIEKEKEISYSQRDKDLFRSHILILIHQEQESKKFIRKLCLALFLAVGTLSLLFSQINEIANDFTVGLSDAITGDVLTTVVFSYGLLFALLALLKKPDFIFN*
JGI26059J44795_1003251	JGI26059J44795_10032512	F005684	VYDTEESPLSTMQVVRRKSGVREGRLCNRNEPRQAHYEPERGRFPDRGWNEHPRRSKSKQVRKASTGPGRMHS*
JGI26059J44795_1011116	JGI26059J44795_10111161	F094002	KIRKSWKIPIFYASGALECPLPRSPNTTTAIATNTPIAAPNAAIDASAIPEMLKVNHIYYW*
JGI26059J44795_1013657	JGI26059J44795_10136572	F002348	METKEXWMKYGGWLLSLLTILAGVYFLWPRIHIALLGITLIYFGVRIFNFSTFDEYREKRMNLLQSLMS*
JGI26059J44795_1024714	JGI26059J44795_10247141	F089404	PKKAARPIAIIAEPGNAKATGKPEANAAIIISTSRDKNRCSII*
JGI26059J44795_1026953	JGI26059J44795_10269531	F066858	KIYDADAKRTSANKILKISGERSEDMNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVXTGTIIIPPPRPIIEPNRPATNPSGISQILSINILG*
JGI26059J44795_1030859	JGI26059J44795_10308592	F050430	MDKLKENIIDAIKIAGMLFFLMILIGTLVWPGGLDTLLTWLS*
JGI26059J44795_1034044	JGI26059J44795_10340442	F027203	PSQGSLLNDFVTTAPAPARYKRSKTSSDMPRMPEARIVGLSRVRVPIEVERLDFTLNSLILFSYNS*
JGI26059J44795_1038870	JGI26059J44795_10388701	F099438	HLIMKKFSIISRSIASFLAVIMFMTPVSSVFAQKAVDNREITVMAERDAKDDAEESGTFLWWCGGFLLTFVIPYVGGLPLALYGYYKGGEPDGVPAVRLMDLEKAYGKGNQEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASAEDDDFTNDAIDFHLGLMGLEKA*
JGI26059J44795_1038993	JGI26059J44795_10389931	F080484	FXGIFXALHLFDVYTQTKKYNRNLSMSIFGQKTPPPTLGTIFPLKTNYKHYFNSFGFPNHRTGIGMFGYSITKRTKNNNEYYMGIGTAIINLSITAGWKYYFKKSNADDYYLAMSLVGSTLEIDDRYDETKKVSKDFIAGNFSAGYEKRLSKNIYLNMEIFTLIGKIPHNERITDGIRLLVAPSFHFNYRI*
JGI26059J44795_1039460	JGI26059J44795_10394601	F013096	MLTDVVSDNAVGLSTLSHTKTVASYEPDASGIHDNAGLKD*
JGI26059J44795_1040108	JGI26059J44795_10401081	F098016	LSQRPLSPSGLPDEASADERLAQVSDDLPEPRLVLPLDDEEPDAPVLEDNAPVSLNGLSQHPADLGQHAAPSIELLLTRPDPAAAGSTVAQPILPGSQPVSPVPGWMSVADLQEPEDQLFLPEMPIGLPAELAEPVAAVFTNGASDAPLAEVPLPEPT
JGI26059J44795_1047032	JGI26059J44795_10470321	F070217	QVEPDQIDKISTMVLANRITNVSGFERMIIGDLLGDEMMETSAASMVISEGQAKEAMGANFDPNCFSDSCAISIGKSFNLSNVITFGIINVKKIADSTDADTLLAVKDSIITATIIMKNFHIGTGQVVSEMSFPFEGDSDKLLMTARRMVWTAVGVEPPPGRFPEDLIDNKVSLKKRILDFYYGTILPWVQDNREIAMVIG
JGI26059J44795_1047297	JGI26059J44795_10472971	F059336	EKVEEAKPEPVVEKVQHLIFDTSIISYILLDNRQVIEGIQNFSENEVKLLTFDDVINDFIENEKLVYNRILTFDQIVNKLKQVGDFQYYKIDKNSEITKRANVLSQAEKYIDDSNILEEKKLSKTDYVLIELLIDKSVVLVTNNTLLKEATTQEAKERNVKVNIFDPLEL*
JGI26059J44795_1048004	JGI26059J44795_10480041	F059336	VEEVKPEPVIEKVQHLIFDTSIISYILLDNRQVIEGIQNFSENEVKLLTFDDVINDFIENEKLVYNRILTFDQIVNKLKQVGDFQYYKIDKNSEITKRANVLSQAEKYIDDSNILEEKKLSKTDYVLIELLIDKSVVLVTNNTLLKEATTQEAKERNVKVNIFDPLEL*
JGI26059J44795_1054439	JGI26059J44795_10544391	F020712	MKKLIMILVTLVTLTLTSNSLAGNSVYIQQDNQDVNGSVFIKQDGTGNKVGISTSSTFNINGTNLTLIIKQIGNSNLATDSNHKSFKGSNMTFDYIATGNSNVLRLDLDDTGADGHYYDIDITGSSNIVEVDTHGSDDV
JGI26059J44795_1054961	JGI26059J44795_10549612	F034217	MYTIPVITITTAVMADHXPNATKSNSAMFYLLNGNKINTLEMAELHA*
JGI26059J44795_1058205	JGI26059J44795_10582052	F034217	VITITTAVMADHTPNTVKSNSAMFYLVNRNKINTLELAELHA*
JGI26059J44795_1067155	JGI26059J44795_10671551	F090504	MEIFVVLTIIFGLILPYWAGVMAKRKGKSFVIWCILQLLFFFPIILIAFHSPIEKKK*
JGI26059J44795_1068048	JGI26059J44795_10680482	F095628	MVYMYSIHLTFCIRNARAALVMKYGIGPFYDLQASSYAYKMRI*