3300002954: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047

Overview

Basic Information

• IMG/M Taxon OID: 3300002954
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057372 | Ga0003886
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10931131
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.550409
  • Long. (^o): -72.180244
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000761	Metagenome / Metatranscriptome	902	Y
F004146	Metagenome / Metatranscriptome	451	Y
F005601	Metagenome / Metatranscriptome	395	Y
F014526	Metagenome / Metatranscriptome	262	N
F031158	Metagenome / Metatranscriptome	183	N
F033397	Metagenome / Metatranscriptome	177	Y
F037438	Metagenome / Metatranscriptome	168	Y
F038357	Metagenome / Metatranscriptome	166	Y
F041945	Metagenome / Metatranscriptome	159	Y
F049144	Metagenome / Metatranscriptome	147	N
F064054	Metagenome / Metatranscriptome	129	Y
F070432	Metagenome / Metatranscriptome	123	Y
F092648	Metagenome / Metatranscriptome	107	Y
F097746	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20281J44786_100038	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1962
JGI20281J44786_100105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1481
JGI20281J44786_100320	Not Available	1049
JGI20281J44786_100859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	745
JGI20281J44786_100928	All Organisms → cellular organisms → Bacteria	729
JGI20281J44786_101061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	695
JGI20281J44786_101251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662
JGI20281J44786_101508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	620
JGI20281J44786_101545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	614
JGI20281J44786_102049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	564
JGI20281J44786_102203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	551
JGI20281J44786_102385	Not Available	535
JGI20281J44786_102771	All Organisms → cellular organisms → Bacteria	508
JGI20281J44786_102782	Not Available	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20281J44786_100038	JGI20281J44786_1000382	F049144	MRVLHLIRRIGALNRGNIITPRQIESACSARLAHTGHNRHSNDTTKPDLALSQIAARFTRHDVKWSRGAFMIIDRRTANPIARLRPIPDTDRFELFYWSNVKGRWTTFGNLGRMKLMLESAHEIVESDPMFRIPRGR*
JGI20281J44786_100105	JGI20281J44786_1001052	F038357	MCPGDPLGNHRQRPIAVSLVFEPVLAHEDGMGVPAPLPHQGRAGLQRSAGVERTSAFLELSRQNLQAALQGGGRAAMGTLLQLIGEPPDDQIATEAQRRADVMQSPPRTPQLLCRLTDQLSDFAINLCQCQTSQPVLPAVVCTERLARVLASRSVVEWGFHGLAGSAMRYTRPRSSLAEARGSPSFFFKVPEKTPRTV*
JGI20281J44786_100320	JGI20281J44786_1003201	F037438	VVGYYNGAWTTDRRRALAFRRREAAEAHAARMRDRCPRNAELINVEEIAAAN*
JGI20281J44786_100859	JGI20281J44786_1008592	F031158	GTSDAPWIEEQRARLIVVETVRRIVAAEYDEVWRKPKLAAKCRAVQLFEQVSPAMAKAQAVLPLECTKQALKGLRGCLHPDLRVGSPCAAAAQAAARSFRKRFGPGADRKIWEMAALILEEAILFGRNDGIDDPVAAAERLERAKVLTAPV*
JGI20281J44786_100928	JGI20281J44786_1009282	F033397	VTPFFLGGVDSENGGAEAAYSALRERSQIAVGCPARSRRIFKLSCRFEGCDCEIEVGRPLPHRRDVVAAILDHGREEAFVVHTLDGAGAPTRIARPVYSVTDFS*
JGI20281J44786_101061	JGI20281J44786_1010612	F004146	ANIAEQPRXAKATTPQNSSRSRYAIDPETITAGRLPQRAPVVTSAANPHYQKHFDRLFDLAKAGDWDGVRNYEVKGSNSYSKMVARYRQDLLAVHAASEAAP*
JGI20281J44786_101251	JGI20281J44786_1012511	F004146	PAVIAAGKLPDKAPVVTSAANPHYQKRFDELHKLAAAGDWAAVRDYKVSGSNSYSKLVARYQQDLLALHAASGDAQ*
JGI20281J44786_101508	JGI20281J44786_1015081	F092648	MRCTPTIHELIVLTLPPRHRCPLTWLPASRLLLPRSGLERSDFV
JGI20281J44786_101545	JGI20281J44786_1015452	F005601	MPKITVPIAAHFLTGSILTLAIPLGVLIVVTIWYVLLWRRGAGER*
JGI20281J44786_102049	JGI20281J44786_1020491	F014526	MKKXELRAAISRGYREMSELTKVKCGGDKCPGVGNRAYRCCDRMHCQMTIDHAYKDWGIRLPTTGHQLPLMGPTGCTALPHLRPWCTLHQCQIQETGSTKDRGWDAKYFRLRNKLIRLEQQLAAM*
JGI20281J44786_102203	JGI20281J44786_1022031	F070432	KGGGGKDPNRVSKYGSIVFDAEAAPSPGSEAQTTLQPGQYVALGAPGEGPPKLHTAFTVTAAKSPMSLPTPEATVRSIEFGFRGPATLHDGELVRFENEGFLVHMDIAFPAKSNKAAKQIVKAMLAGKEKGLEKLAAGAPFSFAGPLSSGSYQQETITAKPGWYVQACFMETQDGRDHTRLGM
JGI20281J44786_102385	JGI20281J44786_1023851	F064054	ERRETDWLITDWERETRQLGHALALMTLDVSAMTGPKWAHRFIIAVDPVVEDSSFLFYGARFASLLGLPETPNHSIPIVAQLPTQYIPVFTRGCITSTLSSSAVRMQGAVERENGGQELYRAAFIRLSLDGNRQQHLVLGAFNCRVAEPAKV*
JGI20281J44786_102406	JGI20281J44786_1024061	F000761	MSTLDEITQEKQRVSEALARIDAQRQKLAGQLGELEATERVLARYSTGTKRTVSAKSPPSPTKAVAPAQRQRGRRPATTAKP
JGI20281J44786_102771	JGI20281J44786_1027711	F041945	HLKPAQFDGEQMSPEQMVEKIRQQQKEIEYLKRQREILKKAMSILGEEPHSGMR*
JGI20281J44786_102782	JGI20281J44786_1027821	F097746	MADEGEQIPVEQESNTGKWILLIVAIVFVAATVYGYVTTTQHVDKITKDLGDSQAQVAELKNRMQTAEASEETLAHQLGITKKELTQRAAQL