NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002881

3300002881: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_165m_A (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300002881 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046785 | Gp0055359 | Ga0005248
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_165m_A (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size40934908
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal inletsea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBritish Columbia, Canada
CoordinatesLat. (o)48.7299Long. (o)-123.5699Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060454Metagenome / Metatranscriptome133Y
F066454Metagenome / Metatranscriptome126N
F083669Metagenome / Metatranscriptome112Y
F099485Metagenome / Metatranscriptome103Y
F102126Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0005248J43193_1003946All Organisms → Viruses → Predicted Viral2474Open in IMG/M
Ga0005248J43193_1005526All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales757Open in IMG/M
Ga0005248J43193_1011879All Organisms → Viruses → Predicted Viral2346Open in IMG/M
Ga0005248J43193_1018372Not Available630Open in IMG/M
Ga0005248J43193_1020791Not Available591Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0005248J43193_1003946Ga0005248J43193_10039465F066454MSIRLDVLILINSGVTDRSEIMERLGINIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDDVSRSELINLWNELTDYYLPYEGDKEFTGRRGLSSL*
Ga0005248J43193_1005526Ga0005248J43193_10055261F099485QIIRNWQHSPSKTQVARTPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD*
Ga0005248J43193_1011879Ga0005248J43193_10118791F102126MGKKGKDIQRGQDAKRLVEDPLYKEAFEDTKNHLIEMLLQTKISEETERDRIYITIKSLGLVDEHIRSVLTTGKLAEGQNEFY*
Ga0005248J43193_1018372Ga0005248J43193_10183722F083669RNKTFIVRSTPQIIQILDNAFDLDGCRDRSILIHKILLPYIKDVIASDATKITNPEGLYEEIEDVFTQYINSI*
Ga0005248J43193_1020791Ga0005248J43193_10207911F060454DGWRDLVEELNNLVDIYSNLDSLESDRDLWYAKGQLSILRQVIGLEEATKLAAEELDLF*

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