Basic Information | |
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IMG/M Taxon OID | 3300002881 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0055359 | Ga0005248 |
Sample Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_165m_A (Metagenome Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | Y |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 40934908 |
Sequencing Scaffolds | 5 |
Novel Protein Genes | 5 |
Associated Families | 5 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses → Predicted Viral | 2 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales | 1 |
Not Available | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → coastal inlet → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.7299 | Long. (o) | -123.5699 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F060454 | Metagenome / Metatranscriptome | 133 | Y |
F066454 | Metagenome / Metatranscriptome | 126 | N |
F083669 | Metagenome / Metatranscriptome | 112 | Y |
F099485 | Metagenome / Metatranscriptome | 103 | Y |
F102126 | Metagenome / Metatranscriptome | 102 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0005248J43193_1003946 | All Organisms → Viruses → Predicted Viral | 2474 | Open in IMG/M |
Ga0005248J43193_1005526 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales | 757 | Open in IMG/M |
Ga0005248J43193_1011879 | All Organisms → Viruses → Predicted Viral | 2346 | Open in IMG/M |
Ga0005248J43193_1018372 | Not Available | 630 | Open in IMG/M |
Ga0005248J43193_1020791 | Not Available | 591 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0005248J43193_1003946 | Ga0005248J43193_10039465 | F066454 | MSIRLDVLILINSGVTDRSEIMERLGINIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDDVSRSELINLWNELTDYYLPYEGDKEFTGRRGLSSL* |
Ga0005248J43193_1005526 | Ga0005248J43193_10055261 | F099485 | QIIRNWQHSPSKTQVARTPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD* |
Ga0005248J43193_1011879 | Ga0005248J43193_10118791 | F102126 | MGKKGKDIQRGQDAKRLVEDPLYKEAFEDTKNHLIEMLLQTKISEETERDRIYITIKSLGLVDEHIRSVLTTGKLAEGQNEFY* |
Ga0005248J43193_1018372 | Ga0005248J43193_10183722 | F083669 | RNKTFIVRSTPQIIQILDNAFDLDGCRDRSILIHKILLPYIKDVIASDATKITNPEGLYEEIEDVFTQYINSI* |
Ga0005248J43193_1020791 | Ga0005248J43193_10207911 | F060454 | DGWRDLVEELNNLVDIYSNLDSLESDRDLWYAKGQLSILRQVIGLEEATKLAAEELDLF* |
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