3300002881: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_165m_A (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002881
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0055359 | Ga0005248
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_165m_A (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40934908
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060454	Metagenome / Metatranscriptome	133	Y
F066454	Metagenome / Metatranscriptome	126	N
F083669	Metagenome / Metatranscriptome	112	Y
F099485	Metagenome / Metatranscriptome	103	Y
F102126	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005248J43193_1003946	All Organisms → Viruses → Predicted Viral	2474
Ga0005248J43193_1005526	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	757
Ga0005248J43193_1011879	All Organisms → Viruses → Predicted Viral	2346
Ga0005248J43193_1018372	Not Available	630
Ga0005248J43193_1020791	Not Available	591

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005248J43193_1003946	Ga0005248J43193_10039465	F066454	MSIRLDVLILINSGVTDRSEIMERLGINIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDDVSRSELINLWNELTDYYLPYEGDKEFTGRRGLSSL*
Ga0005248J43193_1005526	Ga0005248J43193_10055261	F099485	QIIRNWQHSPSKTQVARTPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD*
Ga0005248J43193_1011879	Ga0005248J43193_10118791	F102126	MGKKGKDIQRGQDAKRLVEDPLYKEAFEDTKNHLIEMLLQTKISEETERDRIYITIKSLGLVDEHIRSVLTTGKLAEGQNEFY*
Ga0005248J43193_1018372	Ga0005248J43193_10183722	F083669	RNKTFIVRSTPQIIQILDNAFDLDGCRDRSILIHKILLPYIKDVIASDATKITNPEGLYEEIEDVFTQYINSI*
Ga0005248J43193_1020791	Ga0005248J43193_10207911	F060454	DGWRDLVEELNNLVDIYSNLDSLESDRDLWYAKGQLSILRQVIGLEEATKLAAEELDLF*