3300002794: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-C

Overview

Basic Information

• IMG/M Taxon OID: 3300002794
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072126 | Ga0007251
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-C
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1687521
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea	6
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.56
  • Long. (^o): -89.32
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005950	Metagenome / Metatranscriptome	385	Y
F012397	Metagenome	281	Y
F013020	Metagenome / Metatranscriptome	275	N
F013894	Metagenome	267	N
F023635	Metagenome / Metatranscriptome	209	N
F028663	Metagenome	191	N
F099530	Metagenome / Metatranscriptome	103	N
F106125	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25510J39294_10002	All Organisms → cellular organisms → Bacteria	4545
JGI25510J39294_10048	All Organisms → cellular organisms → Archaea	1570
JGI25510J39294_10105	All Organisms → cellular organisms → Archaea	1168
JGI25510J39294_10189	All Organisms → cellular organisms → Archaea	975
JGI25510J39294_10298	All Organisms → cellular organisms → Archaea	807
JGI25510J39294_10347	All Organisms → cellular organisms → Archaea	776
JGI25510J39294_10451	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	701
JGI25510J39294_10919	All Organisms → cellular organisms → Archaea	529

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25510J39294_10002	JGI25510J39294_100024	F013894	MTYELEEPFFEEKGKITAQKEIGVNKTQMTFSSNGTFKGNIEVTNSGDLVSLSKGNKGTSAQGQGVVTTKDGSEKANYTFLQVGKTTTKDGKSVLRGVGSAVWSTDSTGKLAFLDNMLSFFIIEVDEMGNFSSKDRELK*
JGI25510J39294_10048	JGI25510J39294_100482	F012397	LNRILIPMILVTTFSLLSGPSLAISEIKDEIKATPPLNWEPSPTNNSTTMIWFQNSTKSVFAIIKAPDKLLFPLFFVGPFMTEYLKHKGVLESADQLTFGHSNHGYRYFLNLSSPSELLNSSSGLIPANDFLSKIPQGYDVPFKGMLILTQTHNELYAIIFLNPKEKFESILNEIQPTLDSIRLTSYTTMPN*
JGI25510J39294_10105	JGI25510J39294_101051	F099530	MHDNNEERHEDRNRKMSLEEDKSILEERIDLFEKSLANTGIGLKLTREEIIHIIKSNPAEFLKLLMEMEVFSQEMIKRGRGITK*
JGI25510J39294_10105	JGI25510J39294_101052	F013020	DNNNNDKQEQERLKLDVLNKIFGWIEDKETKAVMINKYYNNKEHRAALKTFLDDMVKALDESTAETNSKEEIKRQLSYIIREIDPPC*
JGI25510J39294_10189	JGI25510J39294_101891	F005950	MKMTYAKKKIKAKIHRTSDYDDKYTGIRDFTDEKAMLHYGLSKVHEVIIKKYTKDDEFMATAQKTRGIKFDYDMELYDYTGTDVRESKR*
JGI25510J39294_10298	JGI25510J39294_102981	F106125	MGADVKGLDDIQKHLRDLAGSADPNTFNEWANRVGTTAKEICNDPDCKRIKLIKNEYSKVKFQFADKEAVDCVIQTIKTHLNSMPRTQQVIFEGFTTELKK*
JGI25510J39294_10347	JGI25510J39294_103471	F028663	MKFNERLSPKQSIVFVIVIAIAVFITMQVVYGQGQVNNSTVAKAKPYSYRNELINRIMNSTCTEKRLVIGAEKPTSVLYLSTIEQILKNCVAEGTLK*
JGI25510J39294_10451	JGI25510J39294_104511	F023635	MLMTNSVQVTILGLSILITFVNVGLIAYPFG*QGEATTALNNSKASSIDGXRTVTPHGANISATLPLLVLFPEASQISTSGFSTKADGKLQIEVLFSKPVDTSTFIPGTSNILAMETNPNATVTVNWDLNNRFLTIVTNDSLNSLCHYDPDCNFALRLDGTAPNAIRATDGSLLNGGI*RLLEGICYCRLTF*PANPVICHAYRH*
JGI25510J39294_10919	JGI25510J39294_109191	F028663	SIILVIVIAITFFITMQVVYGQGQVNNSTVGKSYSYRNELINRIMNSNCTEKRLVIGAEKPTSVLYLSTIEKIFKNCVAEGAIN*