3300002730: Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 day 99

Overview

Basic Information

• IMG/M Taxon OID: 3300002730
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047180 | Gp0094563 | Ga0045859
• Sample Name: Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 day 99
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Sao Paulo, Virginia Bioinformatics Institute
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 269590417
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001784	Metagenome / Metatranscriptome	635	Y
F003217	Metagenome / Metatranscriptome	500	Y
F012882	Metagenome / Metatranscriptome	276	Y
F022024	Metagenome / Metatranscriptome	216	Y
F036417	Metagenome / Metatranscriptome	170	Y
F056049	Metagenome / Metatranscriptome	138	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
zc4day99_1479808	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	517
zc4day99_1491023	Not Available	536
zc4day99_1522823	All Organisms → cellular organisms → Bacteria	605
zc4day99_1524900	All Organisms → cellular organisms → Bacteria → Proteobacteria	610
zc4day99_1557866	All Organisms → cellular organisms → Bacteria → Proteobacteria	743
zc4day99_1594412	All Organisms → cellular organisms → Bacteria	1655

Sequences

Scaffold ID	Protein ID	Family	Sequence
zc4day99_1479808	zc4day99_14798082	F056049	MATRQHHTQPMIRPLEQHVVHSPVRDDAALGPTEDLDRQPDGVPHVVVGLTALFSVMLAMLIAFMIFAGGTVSRAAAVLLALLAVPVIVTTLQRKAARERDHLHPSR*
zc4day99_1491023	zc4day99_14910231	F012882	ETSFYKAPDAVWVKLVIPTAPKGVGRDEFGPLDSQTSIVVRR*
zc4day99_1522823	zc4day99_15228231	F003217	MSDTPYVVQKVEWFQFRSADGKAFFVMVSSLPNGFFTAVPCDLTMVRADHSLMALAPSQDEALAQLQTTLAGKTRDDLFPNAG*
zc4day99_1524900	zc4day99_15249001	F001784	MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAEYVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAAHKGIQVAMMHSVEALMNSIYDLCTSKLQQPEL*
zc4day99_1557866	zc4day99_15578661	F001784	MGEVIHVAFGTEREWEQTHAKTVDSLVAIGALFGDDETLMRAKADCVYHILRQIVEDVPAVQITTRLPENLTEEQLCLMTNAIKEAALKGIEVAMTHSVQVVMSSIYDLCTSKLQQAYSS
zc4day99_1568311	zc4day99_15683111	F022024	NRGEPEAGYPAAYPFRRIVRAVPIGNDDSISPGTSPAPVGFNLGAPSACVLGATAAPDRYGVRNGSSNSTAILSGLLAAIWSRTPYARLTVDEFLAEVIEKRLHGSPRRSKPGGREPYLDGVPLADACTLADARRSALVCALENQ*
zc4day99_1594412	zc4day99_15944122	F036417	MVYYARVPLRKKIPTVLVRLDTDDGVVTFRARWHRSALELQRAILFRLRQGHPLWFEDEWGHSHCFKPERVWGALVDGR*