3300002700: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Biofilm from sections of failed pipe - PAS_821

Overview

Basic Information

• IMG/M Taxon OID: 3300002700
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047444 | Gp0091717 | Ga0024842
• Sample Name: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Biofilm from sections of failed pipe - PAS_821
• Sequencing Status: Permanent Draft
• Sequencing Center: McGill University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 273059129
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrocarbon Resource Environments Microbial Communities From Canada And Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Fort McMurray, Alberta, Canda
• Coordinates
  • Lat. (^o): 55.07
  • Long. (^o): -110.53
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036294	Metagenome / Metatranscriptome	170	Y
F045540	Metagenome	152	Y
F046465	Metagenome	151	Y
F054974	Metagenome	139	Y
F057187	Metagenome	136	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
draft_1401513	All Organisms → cellular organisms → Bacteria	827
draft_1430164	All Organisms → cellular organisms → Bacteria	1758
draft_1438283	All Organisms → cellular organisms → Bacteria → Proteobacteria	3239
draft_1439257	All Organisms → cellular organisms → Bacteria	3700
draft_1442058	All Organisms → cellular organisms → Bacteria	6821

Sequences

Scaffold ID	Protein ID	Family	Sequence
draft_1401513	draft_14015132	F046465	MKDWTDEPIDLDVWKRVPGNPFADYDPADGIALWSLWEMPSSSVGKIVRRGRPPGEPTAVRSIRLPVSTWKRLETEAEAAATSVNDLIRKRLG*
draft_1430164	draft_14301641	F045540	ISDMFDENLDEIDFIKSLSELELIYGFEIPGELFDRTGMTLGEFADELSQLPVIPDNLYPEFFDIKFTSMKLPKRYIELENKTDVDSVQELEEINNQFELLTDRLNVLLGNILVN*
draft_1438283	draft_14382834	F036294	VTVMDKGFSDEAIVGVKLVANEDAMTYLRIKLPESDKEVGAEGWNM*
draft_1439257	draft_14392576	F045540	MSVISMGGNDMSKYIFTLATLLDSKSKIKKHYSPDTVISDLFDEDLDEIDFINSLSELELVYGFEIPEDLYDRTELTLAEFANELSQLPTIPDELFPEFFDIKFTSMKLTKRYIELETKTDEDSFSEMQIINEKFAELDDRLNIVLGNVLIN*
draft_1441660	draft_14416604	F057187	MAENQERNDVTDLFTDESTVEWMEEHLSELKQSVSGPRLLYQSLVVGFVVGLAAHIGGYFLASSVPGGPLGLLVDLLLALGWSLWTGVVVAVFVEVIPEVKRRQIKRAVDAYEAMRLKQAQVAGMHGTAVLKKPHARRVEREQGQKRQRNRARKDG*
draft_1442058	draft_14420582	F054974	MKRSQLNKSRFIVGIILVVIAVLMFLFVKEDYSTAGAIGIGILGLVSIAISRRK*