3300002687: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_200m_A (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002687
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0054873 | Ga0005276
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_200m_A (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31187935
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
Not Available	5
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000155	Metagenome / Metatranscriptome	1877	Y
F015413	Metagenome / Metatranscriptome	255	Y
F020371	Metagenome / Metatranscriptome	224	Y
F046996	Metagenome / Metatranscriptome	150	Y
F077350	Metagenome / Metatranscriptome	117	Y
F081198	Metagenome / Metatranscriptome	114	N
F096688	Metagenome / Metatranscriptome	104	N
F099485	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005276J37295_1004707	All Organisms → cellular organisms → Archaea	809
Ga0005276J37295_1004864	Not Available	523
Ga0005276J37295_1005778	All Organisms → Viruses → Predicted Viral	1190
Ga0005276J37295_1009227	Not Available	1620
Ga0005276J37295_1010630	Not Available	661
Ga0005276J37295_1022035	Not Available	829
Ga0005276J37295_1051275	Not Available	733

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005276J37295_1004707	Ga0005276J37295_10047071	F099485	RNWQHSPSKTQVASTPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD*
Ga0005276J37295_1004864	Ga0005276J37295_10048641	F096688	FLCHRQNEFRTDNEGKLMGIIKSLAVVGYATVMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWNNWRRQNARSRGLELAGNRFRGGGGC*
Ga0005276J37295_1005778	Ga0005276J37295_10057781	F081198	DATAKVAERIEKSNEDTLKAVIETVKDAWQPKSEVAESTNQGYVEEQFDDESAKKFLDKVFENGYGRLVIDKEGWIENHTQEGRITANGSVEEAVGVSGTIPGVKQRANISVQIGNKTATSIRQYGQFEALPTGQTTARFYRITVPDAGAITESVSSDISASTHTLTSIDVTCAIRGWRQTILKAQLEDYPASFLNAIRETARLEAIRDEHKLILEDLASTARDYGGVTTAPYHIGGSDGVATTSTSEEDADGEFDEDGLTFAKRYLQELGQDVGPGKLVAFITPRAFESLATSSSISEYAQIGNPSVTKLGQLERLYGIDLVVTNEVKGDVSNADRNIVAVKGAAWGLASQRTMELELQKQVAGQYWDLVWTHRIGVNVIDPNTYIIVSSVNS*
Ga0005276J37295_1008329	Ga0005276J37295_10083291	F000155	SLQMKFALAIATVAANQYDFMSEDELLSQLASNLSSAQMSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005276J37295_1009227	Ga0005276J37295_10092271	F077350	EVAVTDSALANQIQKTEVDPKQPDIQKLLEELEGKLRGALNVLKPSVNSMCDNLRQAAADIRKDKDATMLWTTLNDMQVFLSLVQQICSSVGTQGPKVVAFDNALGDALGTLETVVVDSESPDEVAAFIESTLIVALGKWDAAEDELRDIAKV*
Ga0005276J37295_1010630	Ga0005276J37295_10106301	F015413	SLLATPQFEQPQFEQLIPKGILGKDMLIGSAGTALSVQVGNIVGKFLPLGQLPVGTSSILAGILLQKFGGSNSMLKKLSEGIIQGGIATAMTPFTSGLIPNFNQEVKEVAQELNPLVKGVMW*
Ga0005276J37295_1022035	Ga0005276J37295_10220351	F020371	DVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIASSKAHNALEVHMTKRQETINTLSST
Ga0005276J37295_1051275	Ga0005276J37295_10512751	F046996	NLRKLHSNGVTITLTLGSWCTELPISTKDEWTDAQFGEFVTYFEDVRQNVFGGYLDGIDFDWEGYCSAGCLKGTCECDWDDKICGEASPSELAAGIFWETSPAPGEPKLKKQCWIMPTSSTFQVMTGITNAMKKKNYVVTLVPMSTSLYSGEPEVMASPVLRNEYGKYAKHTFAGEQVDLLELSDGILLQWYSGFDATLCHNSGDPMACACNNVPDADYPNVLDSDKDVGGLLMASWQTYWNIS