3300002683: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_165m_B (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002683
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0054872 | Ga0005275
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_165m_B (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25318470
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016399	Metagenome / Metatranscriptome	247	Y
F066130	Metagenome / Metatranscriptome	127	N
F077350	Metagenome / Metatranscriptome	117	Y
F081198	Metagenome / Metatranscriptome	114	N
F098669	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005275J37221_100025	Not Available	511
Ga0005275J37221_106066	All Organisms → Viruses → Predicted Viral	1066
Ga0005275J37221_106694	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2314
Ga0005275J37221_112405	Not Available	1154
Ga0005275J37221_112839	Not Available	661
Ga0005275J37221_117470	Not Available	1158
Ga0005275J37221_117677	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	539
Ga0005275J37221_124359	Not Available	1282

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005275J37221_100025	Ga0005275J37221_1000251	F098669	METATRGRKQKWRLKEAEGLGRKRRIGEAEGRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPC
Ga0005275J37221_106066	Ga0005275J37221_1060661	F081198	QGYVEEQFDDESAKKFLDKVFENGYGRLVIDKEGWIENHTQEGRITANGSVEEAVGVSGTIPGVKQRANISVQIGNKTATSIRQYGQFEALPTGQTTARFYRITVPDAGAITESVSSDISASTHTLTSIDVTCAIRGWRQTILKAQLEDYPASFLNAIRETARLEAIRDEHKLILEDLASTARDYGGVTTAPYHIGGSDGVATTSTSEEDADGEFDEDGLTFAKRYLQELGQDVGPGKLVAFITPRAFESLATSSSISEYAQIGNPSVTKLGQLERLYGIDLVVTNEVKGDVSNADRNIVAVKGAAWGLASQRTMELELQKQVAGQYWDLVWTHRIGVNVIDPNTYIIVSSVNS*
Ga0005275J37221_106694	Ga0005275J37221_1066942	F066130	MKTLSLKKIAPCLNRRKKEQRKLSHLNIENFDLTEFLFHRENRN*
Ga0005275J37221_112405	Ga0005275J37221_1124051	F081198	TDVKSEKVEEKVKVTIETDGEVEVGKAEATKTEASDDEKCPEGKKMVAGKCVDAKQESTPESSDLVKATEALTSVIENVGKAWEPKSQVAESTESNGFVEEAFTDVDAKQFMDKLFETGYNKLVMDKEGWIEEHTVPGAADVAGNVTEAVSTSGTISGVKQRSNISIQLGSKTATPLRQYGQFEAIPTGQNTARFYRITNPDAGAITESPTTDITAVTHTLTAIDVTCSIRGWRQVVEKANLEDYPASFLNALRETARLEAIRDEHKLILQDLGATDHDFGGVSTAPYHIGGSDGVATTTTTEEDADGAMDEDGITKAKMYLGKLGNSTAPGQLIAFLSEEAFEALISSTGLSEYTQIGNANVTRLGQLERLYGVDIIVTNELL
Ga0005275J37221_112839	Ga0005275J37221_1128391	F016399	RRVARRGSKGIGSSLKTGIIGDVVKGIGAGSLVSLVMSRVAPNSSITPIASTGAAFLTGGIVGGAANLILSGGLGQLGGIFGGATTPQQEFGV*
Ga0005275J37221_117470	Ga0005275J37221_1174701	F077350	TDSALANQIQKTEVDPKQPDIQKLLEELEGKLRGALNVLKPSVNSMCDNLRQAAADIRKDKDATMLWTTLNDMQVFLSLVQQICSSVGTQGPKVVAFDNALGDALGTLETVVVDSESPDEVAAFIESTLIVALGKWDAAEDELRDIAKV*
Ga0005275J37221_117677	Ga0005275J37221_1176771	F016399	RRSSSMGRGIGSSLKTGVIGEVVKGIGAGSLVSLVMSRVAPNSSITPIAATGAAFLTGGIVGGAANLILSGGLSQLGGMFGGASTPQQEFGV*
Ga0005275J37221_124359	Ga0005275J37221_1243591	F081198	TSKIEEKVKVTIETDGEVEVGKAEANTEVAPVVEAPAPATAAPETTSEKVAERIEKSNADTLKAVIETVSDAWKPKSEVAESTSDAGHVEEAFTDDQATEFMDKLFESGYNKLVLEKEGWIQTHTSQKQSGNGEVQEAVSTSGTIPGVKTASNISIQLGAKTAIPIRQYGQFQAVPVGQNTARFYRITVPDAGAITESPTTDITASTHTLTSIDVTCSIRGWRQTVEKAELEDYPASFLNAIRETARLESIRDEHKLILQDLASTARDFGGVTTAPYHIGGSDGAATSNPTEEDADGELDEDGLTFSKRYLEELGQDTSPGNLIAFISPRAFEALISSTSLSEYTQIGNASVTRLGQMERLYGIDIIVTNELLSANNASRNLVCVKGKAWGLASQRKMEIEFQKNIAGQYWDIVWTHRIGVNVIDAN