3300002670: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_120m_A (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002670
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0055385 | Ga0005255
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_120m_A (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10894947
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F015154	Metagenome / Metatranscriptome	257	Y
F040855	Metagenome / Metatranscriptome	161	N
F042625	Metagenome / Metatranscriptome	158	Y
F081198	Metagenome / Metatranscriptome	114	N
F098044	Metagenome / Metatranscriptome	104	Y
F098669	Metagenome / Metatranscriptome	103	N
F099485	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005255J37291_100001	Not Available	513
Ga0005255J37291_103065	Not Available	1352
Ga0005255J37291_103239	All Organisms → cellular organisms → Archaea	728
Ga0005255J37291_104009	Not Available	850
Ga0005255J37291_105206	Not Available	1157
Ga0005255J37291_106257	Not Available	1027
Ga0005255J37291_107313	Not Available	736

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005255J37291_100001	Ga0005255J37291_1000011	F098669	METATRGRKQKWRLKEAEGLGRKWRIEEAERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPC
Ga0005255J37291_103065	Ga0005255J37291_1030651	F081198	TDVKSEKVEEKVKVTIETDGEVEVGKAEATKTEASDDEKCPEGKKMVAGKCVDAKQESTPESSDLVKATEALTSVIENVGKAWEPKSQVAESTESNGFVEEAFTDVDAKQFMDKLFETGYNKLVMDKEGWIEEHTVPGAADVAGNVTEAVSTSGTISGVKQRSNISIQLGSKTATPLRQYGQFEAIPTGQNTARFYRITNPDAGAITESPTTDITAVTHTLTAIDVTCSIRGWRQVVEKANLEDYPASFLNALRETARLEAIRDEHKLILQDLGATDHDFGGVSTAPYHIGGSDGVATTTTTEEDADGAMDEDGITKAKMYLGKLGNSTAPGQLIAFLSEEAFEALISSTGLSEYTQIGNANVTRLGQLERLYGVDIIVTNELLQANNADRNLVCVKGKAWGLASQRKMEIEFQKNIAGQYFDIVWTHRIGVDIIDPNTYIIVSTVAT*
Ga0005255J37291_103239	Ga0005255J37291_1032391	F099485	IIRNWQHSPSKTQVASTPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD*
Ga0005255J37291_104009	Ga0005255J37291_1040091	F040855	MELRPYYDRPTGQIKNYLSLIEQKIASNFPHWGRGSQGVWPKGDYGKGILRADQFSVLGTYGQWLIPSSGSSGNPSSTSVDSYGWSSN*
Ga0005255J37291_105206	Ga0005255J37291_1052061	F006550	DYNGMQLWLNPVDKTVYATEGAPTHSFAEANGYAIYDFSKHFTNQKNAKDDFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELSYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVAANKVEQRQSFDVISLADASLTAKAAAGAWDTFVAATDRSTANPLLDLGVAQLLIEGSGVGGRMSRIGMHPIDFAKYMGNTFIRGVASTKPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPCIANFQGPQRIGSAHDEETGDDKYFIIDYHLAAIIQAETGRQLTGCSTPTNWT*
Ga0005255J37291_106257	Ga0005255J37291_1062571	F098044	SISNSKQAVIGINSTYDTVLVIEGIILNNPMMSSLQDIAKLNKTNLCKMALMEFMTNPVSTRKLRRLFTAANDDDKFRSVMQGGQLE*
Ga0005255J37291_106257	Ga0005255J37291_1062573	F042625	MTSKEERDQLWKDLKASWAVLKRDSGADEVAKGKAKEKINEIQDALKLDKTDWNQPRSGPPGSHLTKAGASPNPSNNALVEKILGTVLDMKRELNEDLVKINQKLTTLEG
Ga0005255J37291_107313	Ga0005255J37291_1073131	F015154	LSAAEAAIAKNYTVTVSSTASSGSTVTGQSSYYLMASSGAETELAARVVGRAQYPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*