Sample 3300002658

Basic Information
IMG/M Taxon OID	3300002658 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056674 \| Ga0005478
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF127 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF127 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	6405088
Sequencing Scaffolds	26
Novel Protein Genes	31
Associated Families	30

Dataset Contents

Total Genome Size

6405088

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1
Not Available	19
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. CNT372	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Botryobasidiaceae → Botryobasidium → Botryobasidium botryosum	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Aureococcus → Aureococcus anophagefferens	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Ferrimonadaceae → Ferrimonas → Ferrimonas balearica	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2

Not Available

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. CNT372

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Botryobasidiaceae → Botryobasidium → Botryobasidium botryosum

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Aureococcus → Aureococcus anophagefferens

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Ferrimonadaceae → Ferrimonas → Ferrimonas balearica

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → solid layer → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.471116	Long. (^o)	-72.17263	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.471116

Long. (^o)

-72.17263

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001418	Metagenome / Metatranscriptome	698	Y
F003427	Metagenome / Metatranscriptome	487	Y
F003497	Metagenome / Metatranscriptome	483	Y
F004183	Metagenome / Metatranscriptome	449	Y
F004323	Metagenome / Metatranscriptome	443	Y
F005001	Metagenome / Metatranscriptome	415	Y
F017080	Metagenome / Metatranscriptome	242	N
F018933	Metagenome / Metatranscriptome	232	N
F024792	Metagenome / Metatranscriptome	204	Y
F028810	Metagenome / Metatranscriptome	190	Y
F033437	Metagenome / Metatranscriptome	177	Y
F038098	Metagenome / Metatranscriptome	166	Y
F038498	Metagenome / Metatranscriptome	165	Y
F039025	Metagenome / Metatranscriptome	164	Y
F055496	Metagenome / Metatranscriptome	138	Y
F059538	Metagenome / Metatranscriptome	133	N
F060086	Metagenome / Metatranscriptome	133	Y
F062337	Metagenome / Metatranscriptome	130	N
F068857	Metagenome / Metatranscriptome	124	Y
F069734	Metagenome / Metatranscriptome	123	N
F076700	Metagenome / Metatranscriptome	117	N
F078064	Metagenome / Metatranscriptome	116	N
F078069	Metagenome / Metatranscriptome	116	Y
F080934	Metagenome / Metatranscriptome	114	Y
F089618	Metagenome / Metatranscriptome	108	N
F089697	Metagenome / Metatranscriptome	108	N
F093895	Metagenome / Metatranscriptome	106	N
F098181	Metagenome / Metatranscriptome	104	N
F098814	Metagenome / Metatranscriptome	103	N
F098815	Metagenome / Metatranscriptome	103	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005478J37266_100063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	569	Open in IMG/M
Ga0005478J37266_100067	Not Available	597	Open in IMG/M
Ga0005478J37266_100087	Not Available	644	Open in IMG/M
Ga0005478J37266_100090	Not Available	670	Open in IMG/M
Ga0005478J37266_100121	All Organisms → cellular organisms → Eukaryota	1103	Open in IMG/M
Ga0005478J37266_100307	Not Available	582	Open in IMG/M
Ga0005478J37266_100372	Not Available	945	Open in IMG/M
Ga0005478J37266_100422	Not Available	585	Open in IMG/M
Ga0005478J37266_100455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. CNT372	541	Open in IMG/M
Ga0005478J37266_100583	Not Available	812	Open in IMG/M
Ga0005478J37266_100595	Not Available	634	Open in IMG/M
Ga0005478J37266_100728	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Botryobasidiaceae → Botryobasidium → Botryobasidium botryosum	605	Open in IMG/M
Ga0005478J37266_100738	Not Available	833	Open in IMG/M
Ga0005478J37266_101155	Not Available	514	Open in IMG/M
Ga0005478J37266_101274	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	703	Open in IMG/M
Ga0005478J37266_101458	Not Available	696	Open in IMG/M
Ga0005478J37266_101914	Not Available	521	Open in IMG/M
Ga0005478J37266_102191	Not Available	526	Open in IMG/M
Ga0005478J37266_102736	Not Available	572	Open in IMG/M
Ga0005478J37266_102775	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Aureococcus → Aureococcus anophagefferens	684	Open in IMG/M
Ga0005478J37266_102852	Not Available	574	Open in IMG/M
Ga0005478J37266_103536	Not Available	568	Open in IMG/M
Ga0005478J37266_104563	Not Available	800	Open in IMG/M
Ga0005478J37266_106294	Not Available	515	Open in IMG/M
Ga0005478J37266_108164	Not Available	517	Open in IMG/M
Ga0005478J37266_108389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Ferrimonadaceae → Ferrimonas → Ferrimonas balearica	652	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005478J37266_100012	Ga0005478J37266_1000122	F039025	LPLAAPAFNLRLASAANFPARPRANLPARIGVFSPGSLGGKYPTFAVHYALPIDWLLTFQLALVSGLQLGLRLLPIHIWCCPSARLVSQLPILTGCCCNSPLALSAAATPNSRWRLPPVAKPVPYCRLASAVLRRLCRSRLTQLAPCSLTSGWAFDAPLASTEPCIAG*
Ga0005478J37266_100063	Ga0005478J37266_1000631	F089618	VVQPVLRPSATPAANLQLSLPLPPLAAPVSNIRLASAALPPARPRANPPARIGVFSPGSTGGKHPACTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNLRLAPAAAAAPTRAGGCPLLPHRPRTSDSHRLLFCRLCRSRLTQLALRPLTSGWAFDAPLASTEPCIA
Ga0005478J37266_100067	Ga0005478J37266_1000671	F004183	MERLRGANEDRAIPEGGPNGCEASRGFDPEGAKTPEGERKQAAQPAKQAGKECNGFEAWMQPEAGANQSLAAEPKSRTGRKTGKQVSEVAGQDL*
Ga0005478J37266_100087	Ga0005478J37266_1000871	F076700	STGGQPSGSDRLRVLRLDRLQTSDLRRLFRSSARPVVTRSACAAWSFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFAPAASPSALTGREPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPPALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQVSPSVRVYGHRSGSHRLFAP*
Ga0005478J37266_100090	Ga0005478J37266_1000902	F089697	SGVSILITRSSAGAASSGSPSGRPPAFAGAATSGCAGFQDSDLRRCPALQLDRWPTIRLGSVSCPSARPAANLRFASGVPLFRSTFGDPSSLRLTILASSGLRPTILVPPGLRRMALPPARPTTYLRFASMPFFSSAGGFIWLAPYAAPAPRLAPRPVCTGCFTLRLHRP*
Ga0005478J37266_100121	Ga0005478J37266_1001211	F060086	QNNNLLLCCATAGQEDPFELDSNLLLSSGRHGEDREAVLLYDHETPLLGDLAD*
Ga0005478J37266_100307	Ga0005478J37266_1003071	F055496	SKPVGQLVLQPACTATRHPNGWDVSPFAPRRRLWPVTDHCSGAHPRFRFGRSLLFDTAFRSPTAMAFLANRLRSRVDVPGLHLQNRPDIGSNPFGLTLPPSHGFYCRLRDDRRMPVARVSYQSPPSVPGLSLPFGTSRSLGLTVLNPVPADETCLAGCPAFLRSPLPK
Ga0005478J37266_100372	Ga0005478J37266_1003721	F069734	MMSPWLNRTLHLRLAPRMNLRVHSGHGNLGMASCALLISIRRFTIGKPTMNSPTETLTYAFYHAGVAVPTSYR
Ga0005478J37266_100422	Ga0005478J37266_1004221	F003497	PSDPSNSPLPDRHARPKHGSQRIGDIALLLPVTAFIRLRISAPEPIRHFYLLEAFVSERPFARPQRLFSFENHRGEVKAPDLSLRRNSELFFQPVRPSAPTLDGVHHASGDVRRTRPVAVSRAQNSQTSIQLSLPFRTFIPPDRSAQSAAGSEKLTLAPGPFFLRSPKASITF*
Ga0005478J37266_100455	Ga0005478J37266_1004551	F018933	RPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPALYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIADCSAFLTPCLVSLADCSVLNT*
Ga0005478J37266_100503	Ga0005478J37266_1005031	F062337	GCPTSGSTAGQPSGSDRCCLAWLGQWQVLSFRCVLRAADRLAADLPTCVGVRPPARPAITTDSHLALSFSSAGLSASGSHRLPLQQLACAGCCCNPQLALAVATFRHTGGVLPTRIGCSALRLYRFRITRLAPCASTSGWAFDAPLTSTEPCIAGKPSMSIPYPPVRASSGSASLTTFDLRRLLQSLAQPAIPLWLSPQVSPSG
Ga0005478J37266_100583	Ga0005478J37266_1005832	F033437	GVGARHALFPIGTMLGALAFAGLVLPDATLRGMRSSRSHGGIAPTVAGWSLLSEAFSPGSVAPCRGRRAGRGADTPASVGFRVGTVTTGTAPAFGRPFAPRYGSSLLTLRLRSLLQ*
Ga0005478J37266_100595	Ga0005478J37266_1005951	F078064	PEDARTGGYGILIDGLPAMQGLVEVRGASKAQPEVDAQGASRVNRNR*
Ga0005478J37266_100595	Ga0005478J37266_1005952	F059538	CLVNSVVQPLLRPSATPVARLQLSLPLLPLAAPVSNLRLASAALLPARPRANPPARIGVVSPGSVGGKCSAFAAYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSQFPVLTGYCCNN*
Ga0005478J37266_100667	Ga0005478J37266_1006671	F098814	SKPDFQRCSPPACTASNMHSESSSVLPASSPTAGFPGCRIKTAKRAAYF*TGLSARNGLSLARDDLRSRGSHHEVKVPGLLLRFRISRLFRPVRLLLRYQFRLAPVSAASTLQTRCGLTARFCRLRFQLPLPFGNIASLGITASTGFAASQPAFRNCPISVRSPPPYSIARSGCGSSFPARYCFVGLLFLK
Ga0005478J37266_100728	Ga0005478J37266_1007281	F098815	MRSQSLARRVVDTSPFAPRCGFYPASDRCSRARLPFLPARSHCLGTAFPLPFGSPATTVLFRKPPRRGQSSWPIPSASIPNLSSSPFGPELPPSAPFFTSPGAFLAQNPLPAGKPETLKRPSNFRSPSGLSSLRISALGQRLNLRSLPLCSTRFSFAPRWRQSLLITTRHRIIVPDSLPFTRLSAL*
Ga0005478J37266_100738	Ga0005478J37266_1007382	F098181	PELLVPRALRSRRSGIAPCSTLGFACFPRIAPCSAFSARRRSPILLGVQRLAPCASCGLLRTQRLAPVLVTDHSVPRIAPCSALETLPRIWIAPYTTLSLHASLLDYSTLAAFCSASPHGSLRKLRLALCAGLRITPYANTCCPCSVRGLLRVPLVPHRHRLLCVRRLTFGWNPGFLRSSHLSPV
Ga0005478J37266_101155	Ga0005478J37266_1011551	F024792	VTGERLRQAGWLNPSKSVSQGRETGGRIHQFLWRWSHTVSHAKQELCGKKRTETVSSRVK
Ga0005478J37266_101215	Ga0005478J37266_1012151	F003427	VAPGQRTAKAVADPELMVKTRIRSHKRVFTWFASRRPQTPAQASLEASLEISDRKALDGPAMRPKTPLAVENGVGKLAAKERQMSARE
Ga0005478J37266_101274	Ga0005478J37266_1012741	F001418	GGSRGLRKEAAFTSSSGGVRAPSVYAKKGLSGEERLEAVPNRVK*
Ga0005478J37266_101458	Ga0005478J37266_1014581	F017080	LDESVVQPVLRPLATPEAGLQLSLATSSSGCAGFEPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFRRLHCASARPVANLPTCVGVLPPARPATNCRLTSGADPSARLVPNFRLSPVVVAAFSLRLLPLRLSSLRWLSPVCHTGGELPTRIGCYAIQLHRF*
Ga0005478J37266_101914	Ga0005478J37266_1019141	F080934	VVVRFCFLCSPHRDFARFGSALGSAPVGLTANRNLHLGTAFRSPNKTACFQAPLPGSMLLTYPFGSPLSLLRTRSIHPLVHAVRLAPDGANSTRQTRCPVPSERPRPFFRSPLPFGAFGTPPDQSADLNTSREVHQIATPDFLRSPLPAVLIEPATDQRSRLATSRLAYCLTN
Ga0005478J37266_102191	Ga0005478J37266_1021911	F005001	MHGTELRKQERRTIRLSAPRWPFSPAAGSMLPGSPLAASCPEPVARNGFSLARDSCRLSATSIPGSKLPACYFASFQVGFRARSTLRLHYRVPDCAGCGGFIACGPLHCHHSVRPAAPAISTPLRDFCFPRDQSVQPRLLPAGPPGESARFPLAPRRPS*
Ga0005478J37266_102736	Ga0005478J37266_1027361	F028810	VTYPTTQLPPGMHGRSCAICMIVRLAPLLPAPEFRPTRISARKRASRLTANRNLLLGTTFRSFEKTVRYRTPFPKSMLLAYPFGSPLNLPWTRSI*
Ga0005478J37266_102775	Ga0005478J37266_1027751	F038098	RRFPSPGHPCGRPAPVFSTGIQDQGCHPRYLQRLRRSLSTSPFPARSSPARTSQPAFRPAARCPEGCSLVPRRALRPHPGVEVSLAFSLDPEPHGFRFGIRAIPAVLARVVSFKLRVLPRGFYPADSNQLALLTRPIRLAYRYAWRVATSSSTYPARVVRLPSLRTSDCARTVLRYLPQVHCRLTFICAGLRQVPLDFPSEPSPCGFDPAVRNPLPSPRASSYFQDL
Ga0005478J37266_102852	Ga0005478J37266_1028521	F068857	LRVLSLEDGNGLSAANTPGGVKNAIEDGSWRPNGLEEEFRISTKR*
Ga0005478J37266_103536	Ga0005478J37266_1035361	F038498	MRRVNAATCEKLKSLRRNRRLETAFHSLTTTFARHCEVKVPDLLLRLRAENLTEPVRSRTPSLHSVFEAELGRILRPLPVVLRRSPALLRFHSISTPLEAYLQSPPDQSVQPSSSRGSLPDRTSAYPSLPSALSFRIWPRITVPDALCPARLIV
Ga0005478J37266_104563	Ga0005478J37266_1045631	F004323	MPSGRFRSLEGRAAPAAANHSPVTRDYPSRAFGDLFQNHRAAT
Ga0005478J37266_106294	Ga0005478J37266_1062941	F038098	SPARTLPPAFRPAARCPEGCSLVPRRALRPHPGVEVSLAFSLDPEPHGFRFGVRAIPAVPTHVFQVYPGELESACASYPARRPAYRSAWRVATSSSTCPVPVVRLHPLRASGCAGTVLRYLPQVHCRLNFICAGLPQVPLDSPSEPSPYGFDPAVRNPLPSPRASSHLRDL
Ga0005478J37266_108164	Ga0005478J37266_1081641	F093895	PELLVPIFSTSHRSGIAPCSTLAFCAIHGVLRGLHRMPALLADFSAINPLALCPAHELLRARHLAFRSVPGLLRARRFSPCVEPGLLRAQPSRSVPSPDRSVLFPSRFASLTDCSVVDAWLLVSRPERSVLLTSTLSRSPIARCATLCASHRARITSCTTLDLPPWAQIAP
Ga0005478J37266_108389	Ga0005478J37266_1083891	F078069	EPETWAEWGTNIGNYYANKYGSPDSLPNLPRPWLKREPEPEPESWADWGKAIGDHYAAPWTKREPETWAEWGTNLGNYYASKYGSPDSVPNLPRPWQKREPSPEPETWAEWGTNIGNYYANKYGSPDSLPNLPRPWEKREPEPETWSEWGQNIGNYYANKYSSPDSVPGLPQF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002658: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF127 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences