Sample 3300002651

Basic Information
IMG/M Taxon OID	3300002651 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056637 \| Ga0005458
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF107 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF107 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	5501876
Sequencing Scaffolds	20
Novel Protein Genes	21
Associated Families	20

Dataset Contents

Total Genome Size

5501876

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	18
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Acalyptratae → Ephydroidea → Drosophilidae → Drosophilinae → Drosophilini → Drosophila → Sophophora → melanogaster group → melanogaster subgroup → Drosophila melanogaster	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia mallei	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Acalyptratae → Ephydroidea → Drosophilidae → Drosophilinae → Drosophilini → Drosophila → Sophophora → melanogaster group → melanogaster subgroup → Drosophila melanogaster

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia mallei

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → land → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.532967	Long. (^o)	-72.180244	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.532967

Long. (^o)

-72.180244

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004183	Metagenome / Metatranscriptome	449	Y
F007311	Metagenome / Metatranscriptome	353	Y
F016972	Metagenome / Metatranscriptome	243	Y
F018180	Metagenome / Metatranscriptome	236	Y
F018933	Metagenome / Metatranscriptome	232	N
F021676	Metagenome / Metatranscriptome	218	Y
F021919	Metagenome / Metatranscriptome	216	Y
F022827	Metagenome / Metatranscriptome	212	Y
F030100	Metagenome / Metatranscriptome	186	Y
F030305	Metagenome / Metatranscriptome	185	N
F035644	Metagenome / Metatranscriptome	171	Y
F038498	Metagenome / Metatranscriptome	165	Y
F041210	Metagenome / Metatranscriptome	160	Y
F048323	Metagenome / Metatranscriptome	148	Y
F058583	Metagenome / Metatranscriptome	134	N
F059015	Metagenome / Metatranscriptome	134	Y
F076700	Metagenome / Metatranscriptome	117	N
F080934	Metagenome / Metatranscriptome	114	Y
F089618	Metagenome / Metatranscriptome	108	N
F093895	Metagenome / Metatranscriptome	106	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005458J37252_100036	Not Available	812	Open in IMG/M
Ga0005458J37252_100060	Not Available	585	Open in IMG/M
Ga0005458J37252_100208	Not Available	598	Open in IMG/M
Ga0005458J37252_100605	Not Available	668	Open in IMG/M
Ga0005458J37252_100746	Not Available	907	Open in IMG/M
Ga0005458J37252_100774	Not Available	810	Open in IMG/M
Ga0005458J37252_101011	Not Available	579	Open in IMG/M
Ga0005458J37252_101991	Not Available	555	Open in IMG/M
Ga0005458J37252_102241	Not Available	512	Open in IMG/M
Ga0005458J37252_102306	Not Available	825	Open in IMG/M
Ga0005458J37252_102759	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Acalyptratae → Ephydroidea → Drosophilidae → Drosophilinae → Drosophilini → Drosophila → Sophophora → melanogaster group → melanogaster subgroup → Drosophila melanogaster	566	Open in IMG/M
Ga0005458J37252_102923	Not Available	562	Open in IMG/M
Ga0005458J37252_102989	Not Available	569	Open in IMG/M
Ga0005458J37252_104278	Not Available	1369	Open in IMG/M
Ga0005458J37252_104290	Not Available	806	Open in IMG/M
Ga0005458J37252_104559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia mallei	805	Open in IMG/M
Ga0005458J37252_105085	Not Available	731	Open in IMG/M
Ga0005458J37252_105615	Not Available	664	Open in IMG/M
Ga0005458J37252_105847	Not Available	651	Open in IMG/M
Ga0005458J37252_106141	Not Available	1353	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005458J37252_100036	Ga0005458J37252_1000361	F076700	AGVSILITRSTAGVASSSYPSGRSPAFAGAGSSGCAGTVALTCVNALHSGSTGGQPPGSDRFRVLRLDRLQTSDSHRLFRASDRPVVTRSTCVEPSFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLEWLRFQFAPAASPFAFTGREPLGLRLVAPSPAEPLMHSLFPPNLASPAKPSMSIPLPLALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQVSPSVRAGGHPPVLTGCPLRQPCWRSTSGLRRLSLLPAFRQPTPMPF
Ga0005458J37252_100060	Ga0005458J37252_1000601	F059015	SRVHGTIQRPVCMRTFALRPDVRDKTAHRSLPPLFSMRQVIALSRLHHTSLSD*HLAGAGSSIRPFARSQRRFRHHCEVNVPGLHLRFHIGNLRESVRLQALSLRSVSRPNRGAVNAQNPLSAPTSNAPDFSPISTPLQVLLRKPSGSKRSTGSISGSPSYQTFDCLLLPATSSFDSATDQRLKLASFGLTYRS
Ga0005458J37252_100208	Ga0005458J37252_1002081	F004183	MERLRGANEDRANSEGGPNGCEAYQRVDPKGAKTPEGERRQAAQPAEQAGAECNGLEAWMQPDAGANQQLAAESKSRTSRKTGRQVSEVAGQEL*
Ga0005458J37252_100605	Ga0005458J37252_1006052	F021676	MPDGPATRPETPLAVENGVGKPAAPEKGAPNAGSGKRDWRTPIP
Ga0005458J37252_100746	Ga0005458J37252_1007461	F030305	GVFRMPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEAPSCPGSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPVRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVAFRVSPDLPPSDICRFRFSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKFPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFARRRTGLLRTTINQFRIACRAGLQSVSLQ
Ga0005458J37252_100774	Ga0005458J37252_1007742	F089618	GLVVQPVLRPSATPAANLQLSLPLPPLAAPVSNIRLASAALPPARPRANPPARIGVFSPGSTGGKHPACTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNLRLAPAAAAAPTRAGGCPLLPHRPRTSDSHRLLFCRLCRSRLTQLALRALTSGWAFDAPLASTEPCIAG*
Ga0005458J37252_101011	Ga0005458J37252_1010111	F058583	PRVHGTIERTTGMLGVRSAANLSLNLRIAARRRCFSTCAGSMPRSIVKLKSLRRSWKLETAFHSLATTFAHHCEVNVPDLLLRFRTENPAEPVRSRTPPLRSVFEAEPGRNRRPLPVALRRSPALLRFHSISTPLEAHLQSPPDQSVRPSSSRGSLPDETLACPLLPSARSFRILPRITAFDALCSARLIVP
Ga0005458J37252_101991	Ga0005458J37252_1019911	F038498	*ANHRHARRSIRGESVFEFPDHRSPSPFFNMRRVNAATCEKLKSLRRNRRLETAFHSLTTTFSRHCEVKVPDLLLRLRAENLTEPVRSRTPSLHSVFETELGRILRPLPVVLRRSPALLRFHSISTPLEAYLQSPPDQSVQPSSSRGSLPDRTSAYPSLPLALSFRIWPRITVPDALCPARLIVP
Ga0005458J37252_102241	Ga0005458J37252_1022411	F018180	SGLLSLRLHFAHMPAVFFSTSPSFWKVNEACLLSDPSQIGRPFVTPFSAFSVRLVPVRNQPLSSAPCWRTVATIYPLGNCDSLKPETLLSYLTRLGPVSHRASSLSPFFAFTDSARTLPEELVNSASAVLPFGFPLEESCQPAWPDFSPVTWDYPGDLRRLSFVRLHLSR
Ga0005458J37252_102306	Ga0005458J37252_1023061	F007311	VPSCWPPHFAVAPVMDCSMLDAWHSLLHADCSALHFVCPVQTTDLTRCSTLSALRLLRIAPRSTPCARAGHGSLRATDCSVVQHLELCPACGLLRHRDLAFHAALGLLLVRRFPLSVAHGLLRARRLTLHAGLRIAPYADILRPCAVYGLLHFRH*
Ga0005458J37252_102759	Ga0005458J37252_1027591	F021919	SRSQTPRRHATAQSFASRIAGRHPFGSPPRFFKRNGSIPRGSPASFPSWNRHLEAAFHSPETTARFQATISRSKLPTYSFDTLPCIRPARSDPDSPTRPGSPRRAQDHYRNPVA*LLPGTSNPSSDLHSPSGPFGPLRIKAFNPISGRKVHLPSAPDCPSLPNIESILLVRCQITAPGPLSVQWLAVP
Ga0005458J37252_102923	Ga0005458J37252_1029231	F041210	MLSGTSQCGFPMEPVARDGLSLARNGCHLSAASIPGSTVLACHFAASQLASSPGTPLTPSPPLVCPSVGGFFAFRPDASPPAGTFGCFGCLHSPPGLLHPSGSKRSTVSAASRLAFRTRPISSRSPLTVLLLDFDRGSTFQVRYVSGGLLF
Ga0005458J37252_102989	Ga0005458J37252_1029891	F080934	YPTTQLPPGMHGRSCAICVVVRFCFLCSPHRDFARFGSALGSAPVGLTANRNLHLGTAFRSPNKTACFQAPLPRSMLLTYPFGSPLSLLRTRSIHPLVHAVRLAPDGANSTRQTRCPVPSERPRPFFRSPLPFGAFGTPPDQSADLNTSREVHQIVTPDFLRSPLPAVLKEPATDQRSRLATSRLAYCL
Ga0005458J37252_103089	Ga0005458J37252_1030891	F048323	YFDSLTGITESESGKSSEALKITGRPELHEKMKIRKNKKKEC*
Ga0005458J37252_104278	Ga0005458J37252_1042781	F035644	METPASPKEQALSEYVHSDYLTDSERDAEADIPVPDRLLPKREYRRLVEALRLSQKIGLLVWLNRQGLLSLGGRERLLYLQSKCSFEALEAGLRFARRLTEEAKLQSDFQHQMRELNRRPQSKTFRQSESRRIGVGYRDKGMLPEQSLRARRMAWEESFLPTESIPEVLLSVLQKYLPACLTEDGEWVDLSVFPGTFGSEDNPELKTLLHPL*
Ga0005458J37252_104290	Ga0005458J37252_1042901	F093895	PELLVPTFSTSHRSGITPCSTLASCAIHGVLRGRHRMPVLAADCSAINPLALRPAHELLRARHLAFRFVPGLLLARRFPPCVELGFLRVQPSRSVSSSDFSALVPSRFATLTDCSVHVAWLLVSRPERSVLSTSTRSYPPITRCATLCASHRSRITSCPTLDLPSPAQIAPRL*
Ga0005458J37252_104559	Ga0005458J37252_1045591	F018933	RVAGLSLRCSRRSRIAPRSTLDSHCLSQIAPRLALIDRCCSPIARRSTLDAPFRSQIAPRSTLRARGGLGSLLVRHLEPLPRLRIAPYSTLSFPLRSQIAPRSILPAPCRSRIAPRSAIDAQCRSTDISVRLHSAPCAVHGSLRAQHFMLRTGHLLCVRRLHFARFADCSALLTLCLVLHTDCSALNT
Ga0005458J37252_105085	Ga0005458J37252_1050851	F022827	TDHSALPSPDSLQVGDQVSSSSFPSPGHPCGRPAPVFSTGIQDQGCHPRYLQRFRRSLSTSPFPARSSPARTSQPAFRPAARCPEGCSLVPRRALRPHPGVEVSLAFSLDPAPHGFRFGIRAIPAVPIRVVSFKLWVLPQQLESACASYPACSPCVSIRLARRHFLLDLPRTRRSFSTLAGFQLRSYGPTVSPPSSLPAHFYMCRSSAGSSRFSFRMVALRLPPGCSEPIAFAESFFLLSGSL
Ga0005458J37252_105615	Ga0005458J37252_1056151	F016972	VRLNPLTDAIPVVNLYLTIYEFDKISFGAKTSRYGPYGLGYRRATITLTK*
Ga0005458J37252_105847	Ga0005458J37252_1058471	F030100	PKKADARKWTEASGIIPGDWGKVRPGWLAKPLPKQTARLRVGGRIHQFLWRRSRAVSKREKGTERRGMIRSYSEPGQVAQAGFELE*
Ga0005458J37252_106141	Ga0005458J37252_1061411	F035644	MGSPESPEDWALSEYVHSDYFSESERDAEADIPVPDRLLPKRDYRRLVGALRLSQKIGLLIWLNRMDLLSLGGKERLLYLQSKASYEALEAGLRFARRLSEEKKLQSDFMHSMRELNRRPQSKHFRQTSERRRIGVGYRDKGMLPEQSSRARKAAWEESFIPTESIPKGLLEILKRYLPSCLTEDEEWVDLSVFPGTFGSEGDSEMTKLLHPL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002651: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF107 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences