Sample 3300002648

Basic Information
IMG/M Taxon OID	3300002648 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056664 \| Ga0005468
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF117 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF117 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	4534938
Sequencing Scaffolds	28
Novel Protein Genes	31
Associated Families	29

Dataset Contents

Total Genome Size

4534938

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	25
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Funariidae → Funariales → Funariaceae → Physcomitrium → Physcomitrium patens	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → Taphrinomycotina → Taphrinomycotina incertae sedis → Saitoella → Saitoella complicata	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Funariidae → Funariales → Funariaceae → Physcomitrium → Physcomitrium patens

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → Taphrinomycotina → Taphrinomycotina incertae sedis → Saitoella → Saitoella complicata

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → solid layer → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.471116	Long. (^o)	-72.17263	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.471116

Long. (^o)

-72.17263

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001380	Metagenome / Metatranscriptome	709	Y
F001418	Metagenome / Metatranscriptome	698	Y
F003427	Metagenome / Metatranscriptome	487	Y
F003787	Metagenome / Metatranscriptome	468	Y
F004183	Metagenome / Metatranscriptome	449	Y
F005410	Metagenome / Metatranscriptome	401	Y
F005880	Metagenome / Metatranscriptome	387	Y
F006338	Metagenome / Metatranscriptome	375	Y
F009335	Metagenome / Metatranscriptome	319	Y
F009751	Metagenome / Metatranscriptome	313	Y
F010305	Metagenome / Metatranscriptome	305	Y
F013305	Metagenome / Metatranscriptome	272	Y
F017604	Metagenome / Metatranscriptome	239	Y
F024050	Metagenome / Metatranscriptome	207	Y
F027523	Metagenome / Metatranscriptome	194	N
F059015	Metagenome / Metatranscriptome	134	Y
F062515	Metagenome / Metatranscriptome	130	Y
F065469	Metagenome / Metatranscriptome	127	Y
F065470	Metagenome / Metatranscriptome	127	Y
F066368	Metagenome / Metatranscriptome	126	Y
F066797	Metagenome / Metatranscriptome	126	Y
F069734	Metagenome / Metatranscriptome	123	N
F070743	Metagenome / Metatranscriptome	122	N
F071421	Metagenome / Metatranscriptome	122	N
F072941	Metagenome / Metatranscriptome	120	N
F078329	Metagenome / Metatranscriptome	116	Y
F079670	Metagenome / Metatranscriptome	115	N
F088337	Metagenome / Metatranscriptome	109	N
F091420	Metagenome / Metatranscriptome	107	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005468J37256_100313	Not Available	616	Open in IMG/M
Ga0005468J37256_100337	Not Available	970	Open in IMG/M
Ga0005468J37256_100444	Not Available	749	Open in IMG/M
Ga0005468J37256_100557	Not Available	578	Open in IMG/M
Ga0005468J37256_100571	Not Available	594	Open in IMG/M
Ga0005468J37256_100585	Not Available	590	Open in IMG/M
Ga0005468J37256_101142	Not Available	781	Open in IMG/M
Ga0005468J37256_101259	Not Available	1557	Open in IMG/M
Ga0005468J37256_101376	Not Available	586	Open in IMG/M
Ga0005468J37256_101383	Not Available	858	Open in IMG/M
Ga0005468J37256_101449	Not Available	742	Open in IMG/M
Ga0005468J37256_101541	Not Available	808	Open in IMG/M
Ga0005468J37256_101615	Not Available	563	Open in IMG/M
Ga0005468J37256_101767	All Organisms → cellular organisms → Eukaryota	1464	Open in IMG/M
Ga0005468J37256_102081	Not Available	697	Open in IMG/M
Ga0005468J37256_102263	Not Available	582	Open in IMG/M
Ga0005468J37256_102310	Not Available	543	Open in IMG/M
Ga0005468J37256_102411	Not Available	582	Open in IMG/M
Ga0005468J37256_102420	Not Available	644	Open in IMG/M
Ga0005468J37256_102892	Not Available	534	Open in IMG/M
Ga0005468J37256_102948	Not Available	576	Open in IMG/M
Ga0005468J37256_103177	Not Available	759	Open in IMG/M
Ga0005468J37256_103375	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Funariidae → Funariales → Funariaceae → Physcomitrium → Physcomitrium patens	580	Open in IMG/M
Ga0005468J37256_103477	Not Available	507	Open in IMG/M
Ga0005468J37256_103908	Not Available	824	Open in IMG/M
Ga0005468J37256_104037	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → Taphrinomycotina → Taphrinomycotina incertae sedis → Saitoella → Saitoella complicata	500	Open in IMG/M
Ga0005468J37256_104673	Not Available	532	Open in IMG/M
Ga0005468J37256_105729	Not Available	561	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005468J37256_100313	Ga0005468J37256_1003131	F066368	HQPANQVKTACDFLSRLNRLASGQPPLLAVRSPDATGLASSLIDCFFSQSSGAIFNIAGLRKFARGLPSHRVLPVEALFLVRFSAFSFGELNFYFEFCRDAHTVLIRSSNQSLFWQLRFIQARNLPELLHSTRGGFSSPLTADSPFAFGARERTRGTGEFCLRRQPFGRFLEEPSQPT*
Ga0005468J37256_100337	Ga0005468J37256_1003371	F069734	MMSPWLNRTLHLRLAPQMNLRVHSGHGKLGMASGAFTVPIRRFTIGKPTMNSLTETLTYAFYHASVAVPTSYR
Ga0005468J37256_100337	Ga0005468J37256_1003372	F024050	MAVRVTPNVACLWRCLNQQGSELPRWLTFSCHACDEGLELPLIPHLRLYRRWITKSPRCSHHSAVPTYRSLSFPKSRPFGIADDSLSELPRTLNPPAPIDGYPSYLGSRTIRFTMVESPGCPRHSPSATAIDQFPGCPKSWVSHRSPIPRASSCPESWFLG*
Ga0005468J37256_100444	Ga0005468J37256_1004441	F079670	VKRTLKKGLKVLEMVKRERNKIITIDNSLKIKNFFFIKKKSLLIII*
Ga0005468J37256_100557	Ga0005468J37256_1005571	F001380	VQGSQYDSATRLHADVRSAARMLRINRQPLAITAFRRATGHSSQRVLIGLSILPEPESRYGLSLAHNDACATIARSTFLACPFDSTSETFAKPFDSGLHRSVRFRGRIGAISPPDTRSPRQSPTLPISPSPLPFGLSCENPPDQSVQSARFREARLAGRSMAPYSPTPFLSIQRRIDANSLRPALIVP
Ga0005468J37256_100571	Ga0005468J37256_1005711	F070743	SK*PIEQPALPTGMRGQSLACSVAEALPSCSPQRLLSRHGSVRQSSLAFLPARSHRLGTAFRSPATTVPFREPPWRGQRSWPIPSALIPNLSFSPFGLGLPPSAAFFTPPGAFLAQNPLPSSKPETLKRPSNFRSPSGLSSLRIVALGQRLSLRSLPFVSSPIFLRSPKALITCDNYALSDHRSRFASVHQAFCSLN
Ga0005468J37256_100585	Ga0005468J37256_1005851	F005880	FQVTLRQLALRPACTVRTWHPELARREPLAPRCWFWPTADQCAGARLLSIPVEARFSMRPFALQHRGLASRPIPVTASTFPACIFETILRSDPARSAPHSRPRPAFCDLARHDRRVKPVA*SDHRTHASPPDLGSPPGSLDPSGSKPSIRLRTIKLTLAGCPIFLHSPQRGNNFSHHSAPRIIGPDPLLPARLAVL
Ga0005468J37256_101142	Ga0005468J37256_1011422	F003427	MVKTRIRNHKRVFTWFVSRRPQTPAEASLEASLKISDRKALDGPAMRPATPLAVENGVGKLAANGRQMSAREREHG
Ga0005468J37256_101259	Ga0005468J37256_1012592	F066797	LNLYQIISSADLGGSSNYSKETEFQNLFNFEDEVAKVFMTTEIAHESVDPNPKDYEK*
Ga0005468J37256_101376	Ga0005468J37256_1013762	F027523	FQVTKVTARSPTGMLQSELGELELPSIPLSLRVAIFRPPRLNA*
Ga0005468J37256_101383	Ga0005468J37256_1013831	F072941	QRTLKRELKVLEIVKSEATESPIMINITVGEIQSISARLWARVYFECNEWVTF*
Ga0005468J37256_101449	Ga0005468J37256_1014492	F009335	VADPAQMVETRIRNHERVFTWLAGRRPQSPAEASQEASLKIQRPQGAGRPCYEADNSACRGEWRREAG
Ga0005468J37256_101541	Ga0005468J37256_1015412	F010305	LKRAEKPHSKFSGRKALDGPATRPGTPLAVENGVGKLTAPEKGAPNVSTGKRDWRTPI
Ga0005468J37256_101598	Ga0005468J37256_1015981	F062515	MLKTTPLDCEIKGNLREKRRDPWLRANAPSKAVADPEPVVKTRIKIIGVS*
Ga0005468J37256_101615	Ga0005468J37256_1016151	F059015	SRVHGTIQRPVCMRTFALQPDVRDKTTHRSPSPLFSMRQVIALSHLHHASLSD*HPAGAGSSIRPFARSQRRFRHHCEVNVPGLHLRFHIENLCESVRLQALSLRSVSRPNRGAVNAQNPLSAPISNTPDFSPVSTPLQVLLRKPSGSKRSTGSISGNPSHQTFDCPLLPATSSFDSATDQRLKLAS
Ga0005468J37256_101767	Ga0005468J37256_1017673	F066797	LNLYQIISSADLGGSSNYSKENNLFSSTLKTEVAKVFMTTVIAHE*
Ga0005468J37256_102081	Ga0005468J37256_1020811	F088337	WRSLDGLVACRIMHRPIRPLDEDSSCLASCIFRLGQQCASGLPRTTHSLTAPATKFRVAPILQSIRLCRRQIFELPRISRPSAVPVMKPRVAPILRCSGITFDESPSCPEHCIFRLYRRWIFELPRISHPSALLVVESPSFPGLPPSCLASDKFSGLPRFPHLPAPAGCSPSFLGLHPPVSPAVNFQVAPNLLSSG*
Ga0005468J37256_102263	Ga0005468J37256_1022631	F091420	EQSSRVERSETGTMIRRLITKSEWQAGSEGKSGGSQGELFSGTLN*
Ga0005468J37256_102263	Ga0005468J37256_1022632	F078329	MPAPNRTEQQASFKALKRFSRKQKGGELRGRRLAVLIAEAPTGHAGGGRGCEADHLE
Ga0005468J37256_102310	Ga0005468J37256_1023102	F027523	QVTKVTARSPTGMLQSELGELELPSIPLSLRAAVFRPPRLNV*
Ga0005468J37256_102411	Ga0005468J37256_1024112	F013305	VKGRFEQPEPARESLQAGFRALIRRSTKGMAGSKEDSVRRFLAARLMPCMPAGVELFNESLG
Ga0005468J37256_102420	Ga0005468J37256_1024201	F001418	GIVAEAEFTGSSGGVRAPSVNAKKGLSGQERLETVPSRVK*
Ga0005468J37256_102892	Ga0005468J37256_1028921	F071421	VGYKEGAPPKGTQPGTAPGTQGSTEAAQQAIRLPPLSFPRDGPPRFHSGLTATMVCDMRLSGGGNLSPITPKGGYRFGPTPMNLARVVAIGQPPTDPIAACWENQQDFS*
Ga0005468J37256_102948	Ga0005468J37256_1029481	F005410	PIQQFNFLPACTVEVVQSG*TSVLVLVLPVAGFLPPRISAPGHACLLTPDRNPILGTTFRSPGTTARFRATFPKSKLLAYPFGSTLRSRRTRSITPLLHAIWLAPHSANSTRATRCPVPSERPRLFFSSPLPLGVFVPLPIKAFKLTTSREAHRIGTPDLLRSPLPAVFKRPAADQRSRLVTSRSAYCLTN
Ga0005468J37256_103177	Ga0005468J37256_1031772	F065470	MSKGCDDTVGDTSGDNPDPESVLKRYGQAARKGCWERGSGHAETRSLTRRDTGDRSTVTLMSKQRRIARWIGRLEP
Ga0005468J37256_103375	Ga0005468J37256_1033751	F065469	SKPGFTAKLPAGMQRHRALQPESPGVVLSAPHRHFVATAQCFQAHLPASLAGTDLSKRPFTLPKRLPVSRPPFRGQSSRPASSTPYRTFALPVRILVPLRAPVSPGPRKIATKIPLPDFRPAFPALPWISTPLRGLSDPSGSKRSIQFLAGKFASALPIAFYSLASDSILLASPPDHRSRLAKHSSACCS
Ga0005468J37256_103477	Ga0005468J37256_1034771	F004183	ANEDRAILEGGPNGCETCGCVDPEGAKIPGGERMQAAQPEEQAGRDCNGLEAWMQPDAGANQQMAAEPKSRTSSEAGRQVSEVAGQDH*
Ga0005468J37256_103908	Ga0005468J37256_1039082	F006338	MLSGPATRPKTPLAVENSVGKLAAAEMWRQMPARERELGELPS
Ga0005468J37256_104037	Ga0005468J37256_1040371	F017604	MSKGCDETAGDTSGANPDPESPLKTRGQAARKGGWERGSEHEETRSPTRRDSGDGSAKRECRSRG
Ga0005468J37256_104673	Ga0005468J37256_1046731	F003787	PALFTTGMHGIEHCNRERRTRRLSAPRQPFSPVPDQCLETRRRLLSRSGPDARSGFSLARNGCSFRSLHSEVNVPGLPLRFQLAVSAARSALLLCYLNRLAPAWAASSLLARCSFYGSIKDRAPSLHSPLGLLPPSGSKRSAGFAVFRPAFQIRPISLRSPQPVSISSVSATDHRSR
Ga0005468J37256_105729	Ga0005468J37256_1057291	F009751	TIQLPPGMHGRSCAIWMFVRIAALLPASGFRPTRINALQHASRIIPHRNLCLGTTFRSPEKTARYRTTFPESMLLAYPFGSPLSLPQARSIQPLVHAVWLAPDGADSTRRTRCLVPSSRPQPFFKPTLPFGAFGPFPIKALIIPAERFTESARPISFAPRCLLFFK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002648: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF117 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences