Sample 3300002531

Overview

Basic Information
IMG/M Taxon OID	3300002531 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110114 \| Gp0061314 \| Ga0006565
Sample Name	Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-D
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	259866220
Sequencing Scaffolds	19
Novel Protein Genes	19
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	8
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
Type	Engineered
Taxonomy	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Joint BioEnergy Institute, California, USA
Coordinates	Lat. (^o)	38.5402	Long. (^o)	-121.75	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000911	Metagenome / Metatranscriptome	840	Y
F001784	Metagenome / Metatranscriptome	635	Y
F003125	Metagenome / Metatranscriptome	506	Y
F004821	Metagenome / Metatranscriptome	422	Y
F007999	Metagenome	341	Y
F016304	Metagenome / Metatranscriptome	248	Y
F018530	Metagenome / Metatranscriptome	234	Y
F026032	Metagenome / Metatranscriptome	199	Y
F036417	Metagenome / Metatranscriptome	170	Y
F053502	Metagenome / Metatranscriptome	141	Y
F054879	Metagenome / Metatranscriptome	139	Y
F064351	Metagenome	128	Y
F079734	Metagenome	115	Y
F090842	Metagenome / Metatranscriptome	108	Y
F098955	Metagenome / Metatranscriptome	103	Y
F100368	Metagenome / Metatranscriptome	102	Y

Family

Category

Number of Sequences

3D Structure?

F000911

Metagenome / Metatranscriptome

840

F001784

Metagenome / Metatranscriptome

635

F003125

Metagenome / Metatranscriptome

506

F004821

Metagenome / Metatranscriptome

422

F007999

Metagenome

341

F016304

Metagenome / Metatranscriptome

248

F018530

Metagenome / Metatranscriptome

234

F026032

Metagenome / Metatranscriptome

199

F036417

Metagenome / Metatranscriptome

170

F053502

Metagenome / Metatranscriptome

141

F054879

Metagenome / Metatranscriptome

139

F064351

Metagenome

128

F079734

Metagenome

115

F090842

Metagenome / Metatranscriptome

108

F098955

Metagenome / Metatranscriptome

103

F100368

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
JGI25327J35509_1000058	All Organisms → cellular organisms → Bacteria	78175	Open in IMG/M
JGI25327J35509_1000619	All Organisms → cellular organisms → Bacteria → Proteobacteria	29619	Open in IMG/M
JGI25327J35509_1002028	All Organisms → cellular organisms → Bacteria	14669	Open in IMG/M
JGI25327J35509_1002686	All Organisms → cellular organisms → Bacteria	11986	Open in IMG/M
JGI25327J35509_1004106	All Organisms → cellular organisms → Bacteria → Proteobacteria	8503	Open in IMG/M
JGI25327J35509_1004695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7522	Open in IMG/M
JGI25327J35509_1008199	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4567	Open in IMG/M
JGI25327J35509_1008233	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	4549	Open in IMG/M
JGI25327J35509_1008323	All Organisms → cellular organisms → Bacteria	4508	Open in IMG/M
JGI25327J35509_1008882	All Organisms → cellular organisms → Bacteria	4230	Open in IMG/M
JGI25327J35509_1010774	All Organisms → cellular organisms → Bacteria	3489	Open in IMG/M
JGI25327J35509_1011186	All Organisms → cellular organisms → Bacteria	3366	Open in IMG/M
JGI25327J35509_1015558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	2467	Open in IMG/M
JGI25327J35509_1040497	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
JGI25327J35509_1045585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	897	Open in IMG/M
JGI25327J35509_1050666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	820	Open in IMG/M
JGI25327J35509_1054153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	775	Open in IMG/M
JGI25327J35509_1075244	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	594	Open in IMG/M
JGI25327J35509_1083862	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	546	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI25327J35509_1000058

All Organisms → cellular organisms → Bacteria

78175

Open in IMG/M

JGI25327J35509_1000619

All Organisms → cellular organisms → Bacteria → Proteobacteria

29619

Open in IMG/M

JGI25327J35509_1002028

All Organisms → cellular organisms → Bacteria

14669

Open in IMG/M

JGI25327J35509_1002686

All Organisms → cellular organisms → Bacteria

11986

Open in IMG/M

JGI25327J35509_1004106

All Organisms → cellular organisms → Bacteria → Proteobacteria

8503

Open in IMG/M

JGI25327J35509_1004695

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

7522

Open in IMG/M

JGI25327J35509_1008199

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia

4567

Open in IMG/M

JGI25327J35509_1008233

All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium

4549

Open in IMG/M

JGI25327J35509_1008323

All Organisms → cellular organisms → Bacteria

4508

Open in IMG/M

JGI25327J35509_1008882

All Organisms → cellular organisms → Bacteria

4230

Open in IMG/M

JGI25327J35509_1010774

All Organisms → cellular organisms → Bacteria

3489

Open in IMG/M

JGI25327J35509_1011186

All Organisms → cellular organisms → Bacteria

3366

Open in IMG/M

JGI25327J35509_1015558

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium

2467

Open in IMG/M

JGI25327J35509_1040497

All Organisms → cellular organisms → Bacteria

994

Open in IMG/M

JGI25327J35509_1045585

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

897

Open in IMG/M

JGI25327J35509_1050666

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces

820

Open in IMG/M

JGI25327J35509_1054153

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

775

Open in IMG/M

JGI25327J35509_1075244

All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium

594

Open in IMG/M

JGI25327J35509_1083862

All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium

546

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI25327J35509_1000058	JGI25327J35509_100005819	F036417	VTCASTRCINRYGPLPIIDMVYYARVPLRKKIPTVLVRLDTDDGVVTFRARWHRSALELQRAILFRLRQGHPLWFEDEWGHSHCFKPERVWGALVDGR*
JGI25327J35509_1000619	JGI25327J35509_10006199	F001784	MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAARNGIQVAMMHSVEALMNSIYDLCTSKLQQPEL*
JGI25327J35509_1002028	JGI25327J35509_10020283	F018530	MIQGLPGVSQTTRDFVQLVRLFLRDFPELNRLIAGVESTDRQIAWAIMDALADFNGTPPFTTFTLDDLLYRNQHNLMLRMTVISILESVAMLQVRNHINYSNGGITVGVNDKAPELMRWLQYFKATTDQMKQRVKVALNIEGILGSSNMGVSSEYWAVNSTYAAY*
JGI25327J35509_1002686	JGI25327J35509_10026862	F000911	MSISMEKFASHGHFATYDPFGRSDRGTTIFQLQCRSCGYEADNAVSAPSFCPKCHSEAWERFVRPGSILENAARY*
JGI25327J35509_1004106	JGI25327J35509_10041066	F026032	MFCEGYDPAFPTDLRRMTTGIGGWQADDPPTIELTLAVGLWSLEAGRIACRFGIRRPGDDVVYFGEGDTTVDEPGEMAIMPLRLTVTLDRPGVYWAICEFDGRPLVQVPFSVSEAPPPAAGGQPAPLP*
JGI25327J35509_1004695	JGI25327J35509_10046954	F079734	MTVRIYLQAARLLPGPPQAGDLPAERIFIHASDVPELWVETESIAVPPPGRAVSFALARPLDIGIGRVVGTIERAVRKSTKQRLNIAR*
JGI25327J35509_1008199	JGI25327J35509_10081991	F100368	MALLVGGKLRKATSGVDRSQAGCSSWGSDPVKEIGQTCGLNVIVRRASDLE*
JGI25327J35509_1008233	JGI25327J35509_10082332	F036417	MVYYARVPIRQLIPTVLVRLATDEGEVVFRARWKRSPLELQRSILFRLRQGSHLWFENESGHAICFKPESVWGAVVDGR*
JGI25327J35509_1008323	JGI25327J35509_10083236	F064351	MMPNQSAAANGLSAFRSSVAGIRERTVRSTAAAEAVAELDR*
JGI25327J35509_1008882	JGI25327J35509_10088826	F098955	MDPSAIPVFLAGPFPVLHSANVLDREAEVQLDVGLIIGGLPTILAATSFPLDETWDRVEAALSSGDARLGVAGIPHQVESEIGETEVFPSAYIGLECANGERLILAHIRGPDRKQDPEAYAREVIAALLNGQTPAELGELIED*
JGI25327J35509_1010774	JGI25327J35509_10107745	F090842	MVQRFLDVVLRRERVEPDVPICPDHKTEMRLRGKLGRPTRFSHQTEEEYTLIYFCPVEGCNNTAMVERVRTQIPVPGEAPERPPFARRG*
JGI25327J35509_1011186	JGI25327J35509_10111861	F003125	MDPFRILKETWSVGDTIEVEAYRVERQVGLEYDSYRRVYLAHGHEWQIAGQIAKDDGKKYYLLECVA*
JGI25327J35509_1015558	JGI25327J35509_10155581	F007999	ARDGRVTGRGVAAVDEAWERRLARAARARANLVAALRECCELADAVEAFEGEELLEVLSHLDGLRFVMAESAQILQGVVRGLEAYEK*
JGI25327J35509_1040497	JGI25327J35509_10404972	F016304	MRPVLVGFALVADAFVVAALAVARPGGWVAPLVAFGVALVGFAWLWGWSVRHRNDDKPGG
JGI25327J35509_1045585	JGI25327J35509_10455852	F054879	MLDLPANDTRVFLFHSPHAAADPGAAMDKVNAWLGKDRSTTPYANLRIKDISITSDGQGGVYTLIVCSLG
JGI25327J35509_1050666	JGI25327J35509_10506662	F004821	MSKRAGRTTFVSRGRLIGLVRDEHPAGTGQNHTSRLDNRDPGNAADEALFYRARLILGDAVPRPRR*
JGI25327J35509_1054153	JGI25327J35509_10541532	F053502	MSISGLLSLLLALIAALLLVLYWLQRRELKAMGQLTQQLQRIAIGGRLDRRIE
JGI25327J35509_1075244	JGI25327J35509_10752441	F036417	MVFYARIPLRELVPTVLVRLATDDGEIVFRARWKRSPLELQRSILFCLRQGSMLWFEDEWGHALCFRPERVWGAMVDGR*
JGI25327J35509_1083862	JGI25327J35509_10838622	F036417	MVYPARVPLRHRIPTVLVRLATDDGEVVFRARWKRSALELQRNILFRMRRGSPLWFEDEWGHDLCFRPECVRAAMVDGR*

Scaffold ID

Protein ID

Family

Sequence

JGI25327J35509_1000058

JGI25327J35509_100005819

F036417

VTCASTRCINRYGPLPIIDMVYYARVPLRKKIPTVLVRLDTDDGVVTFRARWHRSALELQRAILFRLRQGHPLWFEDEWGHSHCFKPERVWGALVDGR*

JGI25327J35509_1000619

JGI25327J35509_10006199

F001784

MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAARNGIQVAMMHSVEALMNSIYDLCTSKLQQPEL*

JGI25327J35509_1002028

JGI25327J35509_10020283

F018530

MIQGLPGVSQTTRDFVQLVRLFLRDFPELNRLIAGVESTDRQIAWAIMDALADFNGTPPFTTFTLDDLLYRNQHNLMLRMTVISILESVAMLQVRNHINYSNGGITVGVNDKAPELMRWLQYFKATTDQMKQRVKVALNIEGILGSSNMGVSSEYWAVNSTYAAY*

JGI25327J35509_1002686

JGI25327J35509_10026862

F000911

MSISMEKFASHGHFATYDPFGRSDRGTTIFQLQCRSCGYEADNAVSAPSFCPKCHSEAWERFVRPGSILENAARY*

JGI25327J35509_1004106

JGI25327J35509_10041066

F026032

MFCEGYDPAFPTDLRRMTTGIGGWQADDPPTIELTLAVGLWSLEAGRIACRFGIRRPGDDVVYFGEGDTTVDEPGEMAIMPLRLTVTLDRPGVYWAICEFDGRPLVQVPFSVSEAPPPAAGGQPAPLP*

JGI25327J35509_1004695

JGI25327J35509_10046954

F079734

MTVRIYLQAARLLPGPPQAGDLPAERIFIHASDVPELWVETESIAVPPPGRAVSFALARPLDIGIGRVVGTIERAVRKSTKQRLNIAR*

JGI25327J35509_1008199

JGI25327J35509_10081991

F100368

MALLVGGKLRKATSGVDRSQAGCSSWGSDPVKEIGQTCGLNVIVRRASDLE*

JGI25327J35509_1008233

JGI25327J35509_10082332

F036417

MVYYARVPIRQLIPTVLVRLATDEGEVVFRARWKRSPLELQRSILFRLRQGSHLWFENESGHAICFKPESVWGAVVDGR*

JGI25327J35509_1008323

JGI25327J35509_10083236

F064351

MMPNQSAAANGLSAFRSSVAGIRERTVRSTAAAEAVAELDR*

JGI25327J35509_1008882

JGI25327J35509_10088826

F098955

MDPSAIPVFLAGPFPVLHSANVLDREAEVQLDVGLIIGGLPTILAATSFPLDETWDRVEAALSSGDARLGVAGIPHQVESEIGETEVFPSAYIGLECANGERLILAHIRGPDRKQDPEAYAREVIAALLNGQTPAELGELIED*

JGI25327J35509_1010774

JGI25327J35509_10107745

F090842

MVQRFLDVVLRRERVEPDVPICPDHKTEMRLRGKLGRPTRFSHQTEEEYTLIYFCPVEGCNNTAMVERVRTQIPVPGEAPERPPFARRG*

JGI25327J35509_1011186

JGI25327J35509_10111861

F003125

MDPFRILKETWSVGDTIEVEAYRVERQVGLEYDSYRRVYLAHGHEWQIAGQIAKDDGKKYYLLECVA*

JGI25327J35509_1015558

JGI25327J35509_10155581

F007999

ARDGRVTGRGVAAVDEAWERRLARAARARANLVAALRECCELADAVEAFEGEELLEVLSHLDGLRFVMAESAQILQGVVRGLEAYEK*

JGI25327J35509_1040497

JGI25327J35509_10404972

F016304

MRPVLVGFALVADAFVVAALAVARPGGWVAPLVAFGVALVGFAWLWGWSVRHRNDDKPGG

JGI25327J35509_1045585

JGI25327J35509_10455852

F054879

MLDLPANDTRVFLFHSPHAAADPGAAMDKVNAWLGKDRSTTPYANLRIKDISITSDGQGGVYTLIVCSLG

JGI25327J35509_1050666

JGI25327J35509_10506662

F004821

MSKRAGRTTFVSRGRLIGLVRDEHPAGTGQNHTSRLDNRDPGNAADEALFYRARLILGDAVPRPRR*

JGI25327J35509_1054153

JGI25327J35509_10541532

F053502

MSISGLLSLLLALIAALLLVLYWLQRRELKAMGQLTQQLQRIAIGGRLDRRIE

JGI25327J35509_1075244

JGI25327J35509_10752441

F036417

MVFYARIPLRELVPTVLVRLATDDGEIVFRARWKRSPLELQRSILFCLRQGSMLWFEDEWGHALCFRPERVWGAMVDGR*

JGI25327J35509_1083862

JGI25327J35509_10838622

F036417

MVYPARVPLRHRIPTVLVRLATDDGEVVFRARWKRSALELQRNILFRMRRGSPLWFEDEWGHDLCFRPECVRAAMVDGR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002531: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-D

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences