3300002345: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - H_11min_Aerobic (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002345
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055735 | Gp0057514 | Ga0004990
• Sample Name: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - H_11min_Aerobic (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 155596772
• Sequencing Scaffolds: 25
• Novel Protein Genes: 25
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Clitellata → Hirudinea → Rhynchobdellida → Glossiphoniidae → Helobdella → Helobdella robusta	1
Not Available	7
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	12
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Dictyosteliales → Dictyosteliaceae → Dictyostelium → Dictyostelium discoideum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Madison, WI, USA
• Coordinates
  • Lat. (^o): 43.078418
  • Long. (^o): -89.386482
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000736	Metagenome / Metatranscriptome	914	Y
F003657	Metagenome / Metatranscriptome	474	Y
F004521	Metagenome / Metatranscriptome	434	Y
F006424	Metagenome / Metatranscriptome	373	Y
F008678	Metagenome / Metatranscriptome	329	Y
F011207	Metagenome / Metatranscriptome	293	Y
F015175	Metagenome / Metatranscriptome	256	Y
F015697	Metagenome / Metatranscriptome	252	Y
F018307	Metagenome / Metatranscriptome	235	Y
F019441	Metagenome / Metatranscriptome	229	Y
F021903	Metagenome / Metatranscriptome	216	Y
F025660	Metagenome / Metatranscriptome	200	Y
F034481	Metagenome / Metatranscriptome	174	Y
F038054	Metagenome / Metatranscriptome	166	Y
F041033	Metagenome / Metatranscriptome	160	Y
F051950	Metagenome / Metatranscriptome	143	Y
F059673	Metagenome / Metatranscriptome	133	Y
F062910	Metagenome / Metatranscriptome	130	Y
F063845	Metagenome / Metatranscriptome	129	Y
F069054	Metagenome / Metatranscriptome	124	Y
F084936	Metagenome / Metatranscriptome	111	N
F085046	Metagenome / Metatranscriptome	111	Y
F102608	Metagenome / Metatranscriptome	101	Y
F104187	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24215J29973_1000322	All Organisms → cellular organisms → Eukaryota	1360
JGI24215J29973_1002930	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Clitellata → Hirudinea → Rhynchobdellida → Glossiphoniidae → Helobdella → Helobdella robusta	589
JGI24215J29973_1003917	Not Available	620
JGI24215J29973_1004120	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	656
JGI24215J29973_1004187	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	593
JGI24215J29973_1004854	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	756
JGI24215J29973_1005183	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	540
JGI24215J29973_1005832	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	819
JGI24215J29973_1005846	Not Available	599
JGI24215J29973_1006530	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	674
JGI24215J29973_1006930	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	949
JGI24215J29973_1007525	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	598
JGI24215J29973_1009283	Not Available	714
JGI24215J29973_1010190	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	675
JGI24215J29973_1010554	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	793
JGI24215J29973_1011169	Not Available	659
JGI24215J29973_1011606	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1	799
JGI24215J29973_1012608	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Dictyosteliales → Dictyosteliaceae → Dictyostelium → Dictyostelium discoideum	698
JGI24215J29973_1013478	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	707
JGI24215J29973_1014458	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	765
JGI24215J29973_1023048	Not Available	801
JGI24215J29973_1026450	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	760
JGI24215J29973_1030805	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	517
JGI24215J29973_1053336	Not Available	889
JGI24215J29973_1226508	Not Available	856

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24215J29973_1000322	JGI24215J29973_10003221	F006424	MIGTSWVNSVFIGDDLPELGTDLVTALTTLDVNDFSHSAFKL
JGI24215J29973_1002930	JGI24215J29973_10029301	F000736	NVTNRRSNMSEDRAARRNRGGTAAAGDGVVGIPDALLQELIQAFTYIADPSGAGDVTTVKLTEDRLDRLVRSLGIKTSARDMMRDAGGKELDFIGFRDMMIARIKQSDSEENIRNNFQKFENTKGSGKISARELKTALKKMGRVPLRDSEIEEFLRIPGIESDGFIYYEKFMLEFFGEKSKSAD*
JGI24215J29973_1003917	JGI24215J29973_10039171	F021903	AKLVTDSAQGYGPEVVDFYGSGGLTFGFSQSYAAGAAANAYEIWVDRPNSSPNQDSILTFLYDTNVFLIVYQNDGTTGGNKQVLMDAITRVPYAYGFYNNDQWNNIPDSATLWHVIDFSQATGGIVFNGFPGENSTTDPKAAGAKYGYDAGFFEPTKSIPCGHVASRGASPAYCPATLSYPQSKK*
JGI24215J29973_1004120	JGI24215J29973_10041201	F015697	KKRSEPESRIEPVTTSLVVSALAPVVLNLFTGLLGNLFSKPNDVEERVIYGRPMQVKLCGDSNCIQLLDKGSGLTTVGKGDTVQHALGDAVGAMLTTLLEKRLLSFHDLCREHIHFPHPDTQNCPGVEINTCDLSKPVLPEPVCMDTHGESYCKKMKSHCSESMYQTFMMANCYKTCTNNCYKPPPGPCDY*
JGI24215J29973_1004187	JGI24215J29973_10041871	F019441	FQSIIMRFLLISCVLFVSSFHASRAQDIGGIATSVFNDLLSSVVSQWGNMSSSDLAAFIDKLNQPGGLNHVWNALDDHCNSHFDCGPNACCLQPTIQGKRGFTDGNNLHMSSYCSPLKQEGQTCSLYHSGETKSTFSCPCSPGFKCISGGSFQIHPLINIHKNPVCKRA*
JGI24215J29973_1004854	JGI24215J29973_10048541	F059673	GVGKRRVNQRSLLIMFKAMLLSTVLLIICVQFNHGNPHHQIHDDSDISSSSLSSVQATFLKPKANIMRRLNPLKLLFTVAVVPGRNPPYSVEWNLALLKTILLESSHVSDEDKAFFMMEFSNYANDFADWSAEKHDQLERFTEKYFNLYKSPETFLPFIDCPALTYALTDEMINDLQPNIDERKRAEVRARAVNRLCDVE*
JGI24215J29973_1005183	JGI24215J29973_10051831	F015175	VGLIINQINGFQFELTDQAKQYLSHVKMTDLPESVRASLLAKQSRAPADASHWCCVNEQPITTVTQTKVEHATRVVTTKTKVGYVSCGFAGTMRCSQYVTSTRAEIYTYIQTFQVPNMAACASHEVKCCSGYLLVAENCHTFSDLVANQELFQFLHGLGLLSLPNVG*
JGI24215J29973_1005832	JGI24215J29973_10058321	F003657	MSYEPLNRRLAILASVFAFLGVVLGVIALGTNYWTHNYTVAPSVFNDTGMAVRSYNGTTWNGLFKTCYADLPCESNFLALTFILCLLGLLFLLAGGIFSVLDVPKASDRRFITPLLIFVGCVLLTSGLFDYASMRFLNYHSSRAMIAALVFCYTALPISAFVAGRYSALERSVLINNDAHGTQKYSATNGNGL*
JGI24215J29973_1005846	JGI24215J29973_10058461	F084936	NRSPHKMLVLLFLVALAIAAPVKPNFSEDFTAEAIYTIRRGRDHPRSFHGQWFHDGTAKRERFDVEADMVGRVDLYKFWNNTKGGLEYEDIKSHQTCHHRPFVQPYHGIFDFVAGSHYAATCDGGKGARWTATIPGAFELDLCASVDGTTPYWVERKHLVEHRLEVTVRFHEFKAGRSVPSPYCEILTYSLF*
JGI24215J29973_1006530	JGI24215J29973_10065301	F085046	MASMNYCFTVCRAAEEKVQHEHQSSNIDVPHSVSPGTGAYFFGRFFSFGTTPPLSTSSINNPFVINASDSKDDNH*
JGI24215J29973_1006930	JGI24215J29973_10069301	F004521	YQEISH*YISPPAKLQNMLNQQSGGFSASRAPYVPSVAAPRGVYRASYARPRTGYAYGPRPVARAPVPAGRGPGGAGLLAAILGPIGGLTGCLCCLNTIGVWGLFITAIPLTVYMSRWVAAYKNRNPSNNGAEELVGPHLLLLVLLVCSFLFTFMRRS*
JGI24215J29973_1007525	JGI24215J29973_10075251	F011207	LGGALTCICCLSALGLIGLWATFIPFVAFFKYAYDQDMRVYGRSSTILNFEQMIVLLAICLVTIGLVKRQLST*
JGI24215J29973_1009283	JGI24215J29973_10092831	F018307	TKSISNLSKFASRHHRNRHASNMQTKFVFLAALLAVLVLFHFNQAAVQASSLTHSDEEWLDLSSEDLDYEKRLASAKFASGLGKRLASAKFASGLGKRLASAKFASGLGKRLASAKFASGLGKRSLE*
JGI24215J29973_1010190	JGI24215J29973_10101901	F004521	TKREERDRLSAMLPQSGGFSASRAPYVPNVAAPRGVYRATYARPTGAYGSRGRAPPRPVVPAGRAPGGAGLLAAILGPIGGLTGCLCCLNTMAVWGLFITAIPLTVYMSKWVRAFKNRPTYSGAEELIAPHLLLLFVLVCSFLFTFMRRS*
JGI24215J29973_1010554	JGI24215J29973_10105541	F008678	INLRIQHESSSSSSSSSFDFIMTLLRIFPFIGAAIGVSAVVLSIIGVSTKYWFSIGPDVHAGLWYDCKPIVGCAPTQGGRPAALAITALIAIGIGSILAAFSGFARNKPDTPSNLARLCGMVAVILLFSSGILIGAALYTYTGAKTTTGYSFTLMALAQCLSFLGALLVAHWMGSSFYAASS*
JGI24215J29973_1011169	JGI24215J29973_10111691	F051950	ISTEATYQLNFNVGFSTTRSDVLVHLSQ*QY***F*FAFL*CFYYLFSARVVRYRSLKMRPKIVTSFRPHGK*GDFLAAIIPAI*CLNILSNSNFILRLIE*QNEASLFTVRVRARQ*YWVYKFELKNFTDILTAPKNVGYNR*TVNTFGDLQVAEDYLYMLQLRSQNN*VKSY*TEVLKTAGDVKKNHIVAPQEQLSLEITNQAKTNIINNKINSLNL
JGI24215J29973_1011606	JGI24215J29973_10116061	F063845	LLILLRYLNRIFIMLRLLAFLVLQTFVICERKTPPPYPLWPYGFKTEATIVAFDEDNQPHSHRSVFYYSYTNKTSTGKWTGLERHDHFGYCYGWAIGQSMCTILITGDVYVVANNLCCLALPGNYGVPRDWLKSATWLGIEQIHGRTVDHWYSFEHEYWSEVNEPNNGVRYSGPNFKTPRQFTDYDVWDVSPQDSSLFDLPKDVDCSQPCP*
JGI24215J29973_1012608	JGI24215J29973_10126081	F102608	KNSSLLLPLTESQIISQFFTKMNQIQFFVVFLVSLFVSSQAQNGCQYYDSCGVCNGDDSTCCQDYLGFEPAEVDVELLKWTNEQLIADIHTLQENLNVTRSALHDSYINEIDGGRLDLTEYIDAIHAFCAGCECSAEDCDNGKTGCGEEECKLDCDCLSLSQFEFLQSAFLGAIRSVNSI
JGI24215J29973_1013478	JGI24215J29973_10134781	F069054	SRKNRSNIMFLSKYSSSRHVYSKLIERGVLLRSASNAHHSPTETKKTFQTPLSLDPDFRAPPDHELPRAKTSEMKGITFNIRDFYQNYFPNDPVEARTPTPWHMDIYYRKQYYIIGAVLGVLFGLFVSYRRILVDRARRRDWEKHHGDPLSYYDVIGPINPDVKRKVWDDNPNVPKPEGWVSKLHHGEDSH*
JGI24215J29973_1014458	JGI24215J29973_10144581	F025660	EKRTRRNRLFISRSFAWKTFVSTTMLKLVAYLSFFAIILLFQTSYGFLFGHKDKCPVGPYKGGKDFSGEKIMADKTFAQLLKTAGTVAKACKVRIHVTDSFKQLKTPSEYVPASQMPLALGRGIHIQLRDQKGAVVCNQLCMLSRSWKTLPEAACFIDNVQKKGIKFTEPNLLHDGYVAKLSSTEAEAIKEATQKLCAPKTKGAKG*
JGI24215J29973_1023048	JGI24215J29973_10230481	F104187	TAMADNKAILRCTQLYYGDRWIFLKSNLKGVTSQSVLRSDDTDFPVDRVEKWLTDDKRIINISYGTEDKCWVILCHRYDFDVPRVGKQRLFITPDLPEKQIRDAWRDNYKVNVLNYCKDVWVMVTEENSSDVIGQALSTWGDIEDVKGEVGKVWKNNKAVQTLVHGKVDGNWKWVLLAGPADNAGGQTFYVNSDWPMDKIGDYYKNKKYISTLAWNQPEEYWVIICGPHPGGQSLATGGDFPLEKVQAIENLYFYGKRD*
JGI24215J29973_1026450	JGI24215J29973_10264501	F062910	LNQVILTLIFVGFVSSSSSISSTTIERDLNEITKLHKEFLDRSPKIPAHQAFEVRCRAIKECCPDEEENLYDILSESQFNEKCLSNGTKLARSSLSSSCLVTLRQLIELTKEDIYRQYFDTLGSNANRLNRIKTWKKQMKIVCSDEELEGFYCQRANLDLFKSCQRKVLQMIIKENSDDDGTIYKTYVSQMEQEYAIDNQKLAKAFPKV*
JGI24215J29973_1030805	JGI24215J29973_10308051	F038054	DKMSSLFNPNYFQAILNLISGRSTTLATLWGMFWQAAYALIGCVLGAAVFGNFGALIGTVIGAWLGYRAVNPYHSLISQLNELNDRQKHNLAEEIRRTVGSSNVDNLLRYATNGNGRQLIFDLIQRFMLNNQPQPANVNANFFSRLFSS*
JGI24215J29973_1053336	JGI24215J29973_10533361	F034481	FLAFLAVVYASGSHTAVGENVVPHVQPDQVVNPADWHGSWTAKNRYGGVMYTCPKGDVLYGIYSNAGFLIGTINDRVVEGNWYEGGRGARNFYQGSFKITISDDNQEFDGFFNRVALGQGPFRWHESRLGAPEPSNPTWEECFAPDDSVENLLGSYYRSSETGALSGSYFICEDEWNQIYGSFHQPDGYLSGWSVQDATGFHGYRYDANGQSGAYILRALTRDRVKGFYWRGRVAEQNIGTTSWEALYRNGFTATLNQCEQVGPGFNERLRGPRMEDNSASTLQLAVFALIAMVL
JGI24215J29973_1226508	JGI24215J29973_12265081	F041033	MSTPAPTPTTQRARGNPQRNNPLPQNVRNDTVPAVATEVPEVKDEVFSAWFSNLYAQANISDEEIKGYWEAFSYKGFNRLDVLKQLSVVIPDTKIASQAVMLIALRGPQQGSTIKLTNGRSLQEMGVPASGGQGTKKLTCNKIQAATADLAAFFLKRMNAPKRLNLPLPGWLQFPSAGGIKMPAAYREQHLEFSRPILCDHWRHLSGTDLHANGS*