3300002227: Marine microbial communities from the Baltic Sea - M1t6 FKB1 (101N)

Overview

Basic Information

• IMG/M Taxon OID: 3300002227
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110183 | Gp0084985 | Ga0022195
• Sample Name: Marine microbial communities from the Baltic Sea - M1t6 FKB1 (101N)
• Sequencing Status: Permanent Draft
• Sequencing Center: Karolinska Institutet
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 186832289
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 58.133
  • Long. (^o): 10.0
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002077	Metagenome / Metatranscriptome	596	N
F009146	Metagenome / Metatranscriptome	322	Y
F018082	Metagenome / Metatranscriptome	237	N
F034571	Metagenome	174	Y
F045769	Metagenome / Metatranscriptome	152	N
F052632	Metagenome / Metatranscriptome	142	Y
F102071	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
M1t6FKB1101N_1141811	All Organisms → cellular organisms → Bacteria	12894
M1t6FKB1101N_1185057	All Organisms → cellular organisms → Bacteria	8408
M1t6FKB1101N_1446021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	863
M1t6FKB1101N_1576234	Not Available	586
M1t6FKB1101N_1736648	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	630
M1t6FKB1101N_1740280	Not Available	20150

Sequences

Scaffold ID	Protein ID	Family	Sequence
M1t6FKB1101N_1141811	M1t6FKB1101N_114181119	F018082	MKKVLVVGFKVHTSIGKLVKGDTAELPNAEVQTLVRVRPDALKVLGNVEPAPAPAPIKRAKSK*
M1t6FKB1101N_1185057	M1t6FKB1101N_11850577	F002077	VTNLLPQTNNSREISPQQENFLTNLFENGGNVTDAALTAGYSKGSVTWLRTSLADEIINRTKNILSMNAFKAATRLVSTIDNPVPERGDDLRFRAAESLLNRVGLGKQETTNVNVQAVHGIVLLPPKKEVVIDG*
M1t6FKB1101N_1288720	M1t6FKB1101N_12887201	F045769	AKSQPGVESEAIPAGITLLAELDIQGSSDMAALNALKLPDGTTGLPLKGTISPAMFKPNASSTEKMDGTRLKLALPDLQIPALPNGTQISKALLNISDKLPEGFAPSEAPASGPVVSISASAGGDSAQKLFSFEGLSVTSVDLAAMYSNKAWAFGLKGTAQLNATELAYKVAFAKGADQKGEYAVKLEAPGNDGLTVQAVTGRPVPGLSDVALSAIELKKGSAGDSLSAKLMFLDTTGEIDVFHPKGFDAAVFAVTADKLDFKKLIPGNALAGGSLLKPTMVFVPVGKTLQPDDPSIPPKLKANIAKVLADMAKSQPGVESEAIPAGITLLAELDIQGSSDMTALMSSA
M1t6FKB1101N_1446021	M1t6FKB1101N_14460213	F052632	MLINGVNLMHHLNRCRLRSQKRMLEEKQLRSPNLLMQPKNLVEAIHQLFQG
M1t6FKB1101N_1576234	M1t6FKB1101N_15762343	F034571	YMQEGMSDEDAIQKAESEYHGQVNLVEDQALKINKRQVAFQKALRQGCYPSEIVLAMVVDHLQASYNSDSESTVVKEFCRELLTKINDDTLEVANAE*
M1t6FKB1101N_1736648	M1t6FKB1101N_17366481	F102071	KDANIDKLIARLNDKREEVFKLQNIIKSQQEKNLREYHFPESVDN*
M1t6FKB1101N_1740280	M1t6FKB1101N_174028026	F009146	MAHKALFERVKNKLNETVNAAFIRSTKTEKGNTQISERVVIEKIREVLSSLELTFEEAGSQQSKDFRNVGGIGLNIEIKKTDNPVIYFNDTCPSKDIYYVVFFTGKEYKRTPEKNIQPTLLYINGEEFIKDSPWIAEYIAELTALKDKYARGENKKRLAGIMEVYPRPTFKANI