Basic Information | |
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IMG/M Taxon OID | 3300002226 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110183 | Gp0084983 | Ga0022215 |
Sample Name | Marine microbial communities from the Baltic Sea - M1t6 FKB2 (106N) |
Sequencing Status | Permanent Draft |
Sequencing Center | Karolinska Institutet |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 203164960 |
Sequencing Scaffolds | 30 |
Novel Protein Genes | 32 |
Associated Families | 32 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria | 5 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 2 |
All Organisms → Viruses → Predicted Viral | 4 |
Not Available | 7 |
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 | 3 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86E | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → marine water body → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | Baltic Sea | |||||||
Coordinates | Lat. (o) | 58.133 | Long. (o) | 10.0 | Alt. (m) | N/A | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002047 | Metagenome / Metatranscriptome | 599 | Y |
F002077 | Metagenome / Metatranscriptome | 596 | N |
F004866 | Metagenome | 420 | Y |
F005243 | Metagenome / Metatranscriptome | 407 | Y |
F006870 | Metagenome / Metatranscriptome | 363 | Y |
F009146 | Metagenome / Metatranscriptome | 322 | Y |
F013716 | Metagenome | 269 | Y |
F016595 | Metagenome | 246 | Y |
F018082 | Metagenome / Metatranscriptome | 237 | N |
F018290 | Metagenome / Metatranscriptome | 236 | N |
F019634 | Metagenome | 228 | Y |
F025596 | Metagenome / Metatranscriptome | 201 | N |
F034209 | Metagenome / Metatranscriptome | 175 | Y |
F034571 | Metagenome | 174 | Y |
F035479 | Metagenome / Metatranscriptome | 172 | Y |
F036425 | Metagenome | 170 | Y |
F037717 | Metagenome | 167 | Y |
F039086 | Metagenome / Metatranscriptome | 164 | N |
F046643 | Metagenome | 151 | N |
F046974 | Metagenome / Metatranscriptome | 150 | N |
F049098 | Metagenome | 147 | N |
F050420 | Metagenome / Metatranscriptome | 145 | N |
F055007 | Metagenome / Metatranscriptome | 139 | Y |
F058434 | Metagenome / Metatranscriptome | 135 | Y |
F062770 | Metagenome / Metatranscriptome | 130 | Y |
F072007 | Metagenome / Metatranscriptome | 121 | Y |
F074917 | Metagenome / Metatranscriptome | 119 | N |
F076524 | Metagenome / Metatranscriptome | 118 | Y |
F077326 | Metagenome / Metatranscriptome | 117 | N |
F099294 | Metagenome / Metatranscriptome | 103 | N |
F104568 | Metagenome | 100 | N |
F106084 | Metagenome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
M1t6FKB2_1114433 | All Organisms → cellular organisms → Bacteria | 974 | Open in IMG/M |
M1t6FKB2_1119530 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter | 2413 | Open in IMG/M |
M1t6FKB2_1120122 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 697 | Open in IMG/M |
M1t6FKB2_1204921 | All Organisms → cellular organisms → Bacteria | 16092 | Open in IMG/M |
M1t6FKB2_1211828 | All Organisms → Viruses → Predicted Viral | 2372 | Open in IMG/M |
M1t6FKB2_1288987 | Not Available | 812 | Open in IMG/M |
M1t6FKB2_1326417 | All Organisms → Viruses → Predicted Viral | 4356 | Open in IMG/M |
M1t6FKB2_1333867 | Not Available | 23235 | Open in IMG/M |
M1t6FKB2_1350478 | All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 | 512 | Open in IMG/M |
M1t6FKB2_1383380 | All Organisms → cellular organisms → Bacteria | 2931 | Open in IMG/M |
M1t6FKB2_1434484 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 608 | Open in IMG/M |
M1t6FKB2_1438816 | All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 763 | Open in IMG/M |
M1t6FKB2_1442270 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum | 3450 | Open in IMG/M |
M1t6FKB2_1456894 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86E | 5206 | Open in IMG/M |
M1t6FKB2_1482125 | Not Available | 19760 | Open in IMG/M |
M1t6FKB2_1483784 | Not Available | 26544 | Open in IMG/M |
M1t6FKB2_1532237 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | 941 | Open in IMG/M |
M1t6FKB2_1536867 | All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 | 576 | Open in IMG/M |
M1t6FKB2_1567418 | All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 627 | Open in IMG/M |
M1t6FKB2_1610108 | All Organisms → Viruses → Predicted Viral | 2836 | Open in IMG/M |
M1t6FKB2_1619167 | All Organisms → Viruses → Predicted Viral | 1870 | Open in IMG/M |
M1t6FKB2_1642420 | All Organisms → cellular organisms → Bacteria | 1670 | Open in IMG/M |
M1t6FKB2_1642489 | Not Available | 2203 | Open in IMG/M |
M1t6FKB2_1647723 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium | 597 | Open in IMG/M |
M1t6FKB2_1657487 | Not Available | 625 | Open in IMG/M |
M1t6FKB2_1689726 | All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 | 1194 | Open in IMG/M |
M1t6FKB2_1741041 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 14305 | Open in IMG/M |
M1t6FKB2_1763402 | Not Available | 530 | Open in IMG/M |
M1t6FKB2_1822694 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 664 | Open in IMG/M |
M1t6FKB2_1848805 | All Organisms → cellular organisms → Bacteria | 1993 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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M1t6FKB2_1114433 | M1t6FKB2_11144332 | F002077 | VTNLLPQTNNSREISPQQENFLTNLFENGGNVTDAALTAGYSKGSVTWLRTSLADEIINRTKNILSMNAFKAATRLVSTIDNPVPERGDDLRFRAAESLLNRVGLGKQETTNVNVQAVHGIVLLPPKKEVV |
M1t6FKB2_1119530 | M1t6FKB2_11195301 | F018290 | QFTFTRLTPFLIQAELQGLAKISLHRHLGTMAYTTLNSDGSSQSNTVFQCDSVPRLL* |
M1t6FKB2_1120122 | M1t6FKB2_11201221 | F099294 | LLISSCDSYESSQKSMLDFIDPSWALIYSVDDVSQVEKDLQDNVLLGKISTTKLQQVLKKHPFIGKLPYSSEILIALPKAQDTANNVLVIAKSHKTTPQDSLQNTSPPKKGIVIKKYSGETIYQAQVGDYILLSGTKKYLEKALKQEKNQDLALVKLMGSNTFKGISVYTKYNTFLDSEATLSAWNGLDLTLVSKGVQGSGIAMIQDSLQLLSVFKGQQSHGFSMASMIPNT |
M1t6FKB2_1204921 | M1t6FKB2_12049212 | F018082 | MKKVLVVGFKVHTSIGKLVKGDTAELPNAEVQTLVRVRPDALKVLGNVEPSPAPAPIKRAKSK* |
M1t6FKB2_1211828 | M1t6FKB2_12118283 | F039086 | MEQFIINFWEIISGLLLVVFMAITWKAEIGARISVLEDKVRTLFELINNRKD* |
M1t6FKB2_1288987 | M1t6FKB2_12889871 | F046974 | MAGKPLRKKILIDVAQRGGAEYLFEELASGKTMTKLAENYGCSREYFSKTIHGVPEYAAVIGKAKTAAADALVEEGLGMVDALDGGSSTQEIAATREKVRSEEHT |
M1t6FKB2_1326417 | M1t6FKB2_13264174 | F049098 | MSRPNKISEQTKSYNLTVSIKDYSELEKFATRESDRYAIQVSVADLIRNAIKLYLEDLRIADDGRTEDGNN* |
M1t6FKB2_1326417 | M1t6FKB2_13264177 | F036425 | MAFDQINVKDCLCDMYDIKRKVKQTKVVHDVKGHTLEIPLFNAPKDNDGTIFTLGDCIDNVIEQLEQELKLRGQEI* |
M1t6FKB2_1333867 | M1t6FKB2_133386730 | F076524 | MSEENSKVYHLTADYKKSTYQTEQWNNVLSNGKHVRFEVTNYFYWGTFEIELTDKEKEEILKKKSILLNDYAGVSVESLDDGCDCCDEICNKESFTPEELKEIHRLLYLDPDDEESYTSDCDDTNTDILEQNGWSMDDTIYGIDTGCELECISGEE* |
M1t6FKB2_1350478 | M1t6FKB2_13504781 | F072007 | WMKKLLAMLALAILITGCYAKESNKDYDKTEEPKARRY* |
M1t6FKB2_1383380 | M1t6FKB2_13833802 | F055007 | MSNCAHCNKRFTCGCQKASLGNGVIVCKQCKTKAEADVSTSSNLNRELARQQIQDLRNK* |
M1t6FKB2_1434484 | M1t6FKB2_14344842 | F025596 | MSKYTNTLANLSYLFGMAILILGLVDRKMRLMDVSDAQWIILSLVLGIFFPILLNALFFK |
M1t6FKB2_1438816 | M1t6FKB2_14388161 | F062770 | KQDKHRVKHSTLADYCDMIVEGVSTEDEHFKENVV* |
M1t6FKB2_1442270 | M1t6FKB2_14422706 | F074917 | MRFAKTKRQKPASSLTTKAKDKLDTIRQNPINQQKKQCGDRCHYKYSQCSSAGFTPRRPGNPVDFLTDLSNKLCGRHSSHRYLPIQVLIYQDMAISTLRFRGFSIRLTASI |
M1t6FKB2_1456894 | M1t6FKB2_14568941 | F104568 | MKKIIIHFLFVASCLSWVLVFILSFIFFSPNQTLQLFNNFLPSSYDLQYSEVMNKGSFLNPILEFSNISIQINDVQVYSANKSHYGFLVSPALIIGKVTMSHIHLEEANILLADYSAQKMPKLKINLDKNISISFHETSLAHLGSEMLINGQLDSLIPGLANGHINISHHGKISNLSIDSDGEDSNFLVNLNTLDWLKFFPNDYLSSSKTMQFGITAIGSLTPKGSSIKGSLNLEESSFSSLTIKKNYGSFFFQSQDGLSILSLKNFLHPFVDEQFPIK |
M1t6FKB2_1482125 | M1t6FKB2_14821254 | F019634 | MPTKLTALINRASVSNTTYFAAQRGIFFDDMADLIKRVEAEGFSTQQNDGERVMVGFKVWMTRHGVITPARTTNL* |
M1t6FKB2_1483784 | M1t6FKB2_148378431 | F009146 | MAHKALFERVKNKLNETVNAAFIRSTKTEKGNTQISERVVIEKIREVLSSLELTFEEAGSQQSKDFRNVGGIGLNIEIKKTDNPVIYFNDTCPSKDIYYVVFFTGKEYKRTPEKNIQPTLLYINGEEFIKDSPWIAEYIAELTALKDKYARGENKKRLAGIMEVYPRPTFKANIGGFLGMNMRDISSLNNNIIN |
M1t6FKB2_1532237 | M1t6FKB2_15322371 | F013716 | SNASRRFYLCYLLLPYLQQTEEEKMNKYELKYMYEQEATKVENLIDINGKNAHHIQDLYSELKKKDANIDKLIARLNDKREEVFKLQNIIKSQQEKNLREYHFPESVDN* |
M1t6FKB2_1536867 | M1t6FKB2_15368671 | F050420 | MAFLKQCLIVISVLLPLSISASEDFKYNYEHDSLGDRDDAGGDVTFRAHKDNATTFEYAHVNINWKGGFFKSSITDDFIQKKEIKNGLVLYDIVEGNQKKGYSVFA |
M1t6FKB2_1567418 | M1t6FKB2_15674181 | F002047 | LILFGMKQKISLPEVVSKDRETLVRKGFLELKEGKYTMTPQALAICGTLDSYFIKAKKKTDIQLMGKDFVEKINNYREVFPAKKLPSGKPARNNVKALGEAFRWFFETYDHTWEEVHKATRMYVNEYRDADYMYMQTSQYFICKQDKHRVKHSTLADYCDMIVEGVSTEDEHFKENVV* |
M1t6FKB2_1610108 | M1t6FKB2_16101082 | F034571 | MSREHFHESQIEDKVEKYMQEGMSDEDAIQKAESEYHGQVNLVEDQALKINKRQVAFQKALRQGCYPSEIVLAMVVDHLQASYNSDSESTVVKEFCRELLTKINDDTLEVANAE* |
M1t6FKB2_1619167 | M1t6FKB2_16191673 | F037717 | MARNVTAVKTRTNDSAKVDMYTVPAKNTAEIHMIYILATAGNEDADLYWYDSHTTTEYPLAHAKSLQATNGEYLLLNNLQIDLKENDILRVQNSGTSSTITYMVSMNLAPSITTQFHN* |
M1t6FKB2_1642420 | M1t6FKB2_16424201 | F004866 | MAIVNKVDLKHQVDINVSIKYQIVTYCFFNDTLISNSDLKFLTELAKEKGIELTKFCNKTVNEDIFKSAQSARNAITKAEKKGLLVKTGHNKKTIKLNPDINVQSNGLVLLDYKILGRESEKS* |
M1t6FKB2_1642420 | M1t6FKB2_16424203 | F005243 | VFINFKKHMMTDFKTNENLQDKDPKMSKEEMAARRDEITTFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMFMAQQYAAQKGEGTPDPESPEGKAFQDAMAKAMTNETA* |
M1t6FKB2_1642489 | M1t6FKB2_16424895 | F016595 | MAYFFKCEICDHQETFSDTFEIPTKALEGSLADYESVICSSCISNKTRLKGNHIIINRRTS* |
M1t6FKB2_1647723 | M1t6FKB2_16477232 | F046643 | MSNLIWSYGDTKLDRQGRTIYFIEYANQTDSKGNQIELWEPEDIFLARSPNYLKSVKHFLSILYYCCVCLFVAYIVLSVSMHFFDSISDDGLIETLKQMLEGCGTGCRVMR* |
M1t6FKB2_1657487 | M1t6FKB2_16574872 | F035479 | MSIKRYIAVVLWAVIGLAINTQFDPNTVIGSVMGSAFIFIWIGVLVIGIFAWIN |
M1t6FKB2_1689726 | M1t6FKB2_16897262 | F006870 | PLFAFLYLINHMKKISLVFLLAISLVVTSKASSLETKLSPQGSDKYNFLITGDDKSSEKKLRDVFQNKVNEVCGTRFEIISIATYQINKEGVKNNVLDGTFKCFVNSQM* |
M1t6FKB2_1741041 | M1t6FKB2_174104117 | F034209 | MDDEIKKLTQHDMSDDCPVCRTQDVVAMALMPAAAAWEMANELPRFSLALQGAAGLLGAMLEEGVDRTEIDTALSDLLDDIEAAIAEDRVMGGPPQGSA* |
M1t6FKB2_1763402 | M1t6FKB2_17634021 | F106084 | MNLALRDHKIFQLRAELENRKRILCTKRRQLAKNTKENQFLKGVADDYDTYNTYIISQKERQISFFKTLNMYIESVTNELQLTDSKLKESKREQREITKELLFLKNELDDLVESNESDINSNISINSNEQTE* |
M1t6FKB2_1822694 | M1t6FKB2_18226942 | F077326 | MKTLVKPTLLLLFFVALCALPSQVTAQLSANTATSFSITIEIDGNNTTLACNGGCDWKKITVQDNNTLVGENGVANNKKAANGSAFLFEVQKNTSGITLQQIQGTQWAAPIDISC |
M1t6FKB2_1848805 | M1t6FKB2_18488054 | F058434 | MSKFFKFIKDIVLPEVVNKERRTKILSEGIIETWQSEEQERKAKEAKEIAKEAYKKVRSSKEGY* |
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