3300002224: Marine microbial communities from the Baltic Sea - M1t6 BS2 (105N)

Overview

Basic Information

• IMG/M Taxon OID: 3300002224
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110183 | Gp0084988 | Ga0022193
• Sample Name: Marine microbial communities from the Baltic Sea - M1t6 BS2 (105N)
• Sequencing Status: Permanent Draft
• Sequencing Center: Karolinska Institutet
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 117009831
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Colwellia → unclassified Colwellia → Colwellia sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 58.133
  • Long. (^o): 10.0
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003647	Metagenome / Metatranscriptome	475	Y
F005817	Metagenome / Metatranscriptome	389	N
F019651	Metagenome / Metatranscriptome	228	Y
F023593	Metagenome / Metatranscriptome	209	N
F027690	Metagenome / Metatranscriptome	194	Y
F028322	Metagenome	192	N
F033501	Metagenome / Metatranscriptome	177	Y
F033962	Metagenome / Metatranscriptome	176	N
F057667	Metagenome / Metatranscriptome	136	Y
F061041	Metagenome / Metatranscriptome	132	Y
F104568	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
M1t6BS2105N_1154786	Not Available	676
M1t6BS2105N_1161161	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1553
M1t6BS2105N_1309943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster	1399
M1t6BS2105N_1324608	All Organisms → Viruses → Predicted Viral	1854
M1t6BS2105N_1398571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	518
M1t6BS2105N_1412591	All Organisms → Viruses → Predicted Viral	2758
M1t6BS2105N_1496551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Colwellia → unclassified Colwellia → Colwellia sp.	562
M1t6BS2105N_1526383	Not Available	2057
M1t6BS2105N_1527397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster	1923

Sequences

Scaffold ID	Protein ID	Family	Sequence
M1t6BS2105N_1154786	M1t6BS2105N_11547861	F023593	MNEIDELAQYQADVILETLKEQVEWSIADYDLDGDDYYNLRDYTVYQTVIKLLEQVDLVDVDYYKQNTIISG*
M1t6BS2105N_1161161	M1t6BS2105N_11611613	F057667	MEDIILNHWQSILFALLIAARAIFSLIPSDSQAVKIFGWIDIVITALVGGDRRKNKNKKKAK*
M1t6BS2105N_1309943	M1t6BS2105N_13099432	F028322	MINMKLLDFWGSFQTNEKRMIKILLFLLPLIVVFIYLGDISNKISAKKLNLEVAKANFDYVYDKALNFQKYSLAQKALFDYPEKKDFIFSESKRYPLIDFQLGEEEGIMFIVFKSESVVNYAQFLESLVNHPEIEIISLSITPNSEFQQVKAFLQ*
M1t6BS2105N_1324608	M1t6BS2105N_13246085	F005817	MRSDLLSRLKPEFKQGLEDNKTRYPASIHDLEFVLGQITFYNDLTVNQVLNLFLFSDMQYLDRKNFDWRYGEDAFELENNVA*
M1t6BS2105N_1324608	M1t6BS2105N_13246086	F003647	MVMCEWTLADVKNRASNKAFAKQTILKLDIESYKQELKNGTYGGITHAEAEQVLEGYKTE
M1t6BS2105N_1398571	M1t6BS2105N_13985711	F061041	NLVLGINQNPLVMEDLVHHQEMERKKVSVTKENLVLQKRITRNQQDSQIIQNTLEKKHLKVHLLVERKKALVLMERRSLKVEVIDLKALPSKNIVKKELKSKIF*
M1t6BS2105N_1412591	M1t6BS2105N_14125916	F019651	MTTLEKFQEEANINFIQTPSHADIEIGELNTADGYELFYVTQDVQNLQFDSEVYYYKPDFDTIMIEIKNAYTRNQTVPGSTPINVCVYDIEDWFDEYDMLNYLESEMDEESFEAFTNEEE
M1t6BS2105N_1412591	M1t6BS2105N_14125917	F033962	MTMTELKKYMAEQKRIKVIQWNKERQGDHCQGFTQKEFEQSMEVDRIKSRTRRTHSKGNLWVFNNTKNRELFTK*
M1t6BS2105N_1496551	M1t6BS2105N_14965512	F027690	MGGAPKKIGRATKKAAQGLEKMLVEPLEKPVKKAVNVVEKVGAEIVEPLERPVKKLTREVVDTVMGIDKYDRNPPEPEITPEVTPEIVPDEKPTITTRYATRGKRSGQGGTIMEGYGVT
M1t6BS2105N_1526383	M1t6BS2105N_15263832	F033501	MNAIEFINEMDYLAQVHFAEFGYDTCSHSEKKAVIKLLLHNLNK*
M1t6BS2105N_1527397	M1t6BS2105N_15273973	F104568	MKKIIIHFLFVASCLSWVLVFILSFIFFSPNQTLQLFNNFLPSSYDLQYSEVMNKGSFLNPILEFSNISIQINDVQVYSANKSHYGFLVSPALIIGKVTMSHIHLEEANILLADYSAQKMPKLKINLDKNISISFHETSLAHLGSEMLINGQLDSLIPGLANGHINISHHGKISNLSIDSDGEDSNFLVNLNTLDWLKFFPNDYLSSSKTMQFGITAIGSLTPKGSSIKGSLNLEESSFSSLTIKKNYGSFFFQSQDGLSILSLKNFLHPFVDEQFPIKFNFRNNTIAIPNLFLSNEV