Sample 3300002178

Basic Information
IMG/M Taxon OID	3300002178 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0099548 \| Gp0055133 \| Ga0005341
Sample Name	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_150m
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300002178 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0099548 | Gp0055133 | Ga0005341

Sample Name

Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_150m

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	181297340
Sequencing Scaffolds	32
Novel Protein Genes	33
Associated Families	29

Dataset Contents

Total Genome Size

181297340

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria	3
Not Available	20
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp.	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp.

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium

All Organisms → cellular organisms → Archaea → Euryarchaeota

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	oceanic mesopelagic zone biome → marine mesopelagic zone → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

oceanic mesopelagic zone biome → marine mesopelagic zone → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Pacific Ocean
Coordinates	Lat. (^o)	8.0	Long. (^o)	-156.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Pacific Ocean

Coordinates

Lat. (^o)

8.0

Long. (^o)

-156.0

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002129	Metagenome / Metatranscriptome	591	Y
F002348	Metagenome / Metatranscriptome	568	Y
F005684	Metagenome / Metatranscriptome	393	Y
F006717	Metagenome	366	Y
F009558	Metagenome	316	Y
F029236	Metagenome / Metatranscriptome	189	Y
F033215	Metagenome / Metatranscriptome	178	Y
F048926	Metagenome / Metatranscriptome	147	N
F049215	Metagenome / Metatranscriptome	147	N
F056891	Metagenome / Metatranscriptome	137	Y
F060826	Metagenome	132	N
F060979	Metagenome / Metatranscriptome	132	Y
F064788	Metagenome	128	Y
F066918	Metagenome	126	Y
F070221	Metagenome	123	N
F080484	Metagenome	115	N
F081443	Metagenome	114	N
F083802	Metagenome / Metatranscriptome	112	N
F084705	Metagenome	112	Y
F087736	Metagenome	110	Y
F089023	Metagenome	109	Y
F090267	Metagenome	108	N
F092694	Metagenome	107	N
F097500	Metagenome / Metatranscriptome	104	N
F098016	Metagenome / Metatranscriptome	104	N
F098022	Metagenome / Metatranscriptome	104	Y
F101330	Metagenome / Metatranscriptome	102	N
F101349	Metagenome	102	Y
F101354	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
JGI24815J26687_1001804	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	5566	Open in IMG/M
JGI24815J26687_1003027	All Organisms → cellular organisms → Bacteria	4223	Open in IMG/M
JGI24815J26687_1003487	All Organisms → cellular organisms → Bacteria	3924	Open in IMG/M
JGI24815J26687_1010088	Not Available	2111	Open in IMG/M
JGI24815J26687_1010931	All Organisms → Viruses → Predicted Viral	2009	Open in IMG/M
JGI24815J26687_1010984	All Organisms → cellular organisms → Bacteria	2003	Open in IMG/M
JGI24815J26687_1015961	Not Available	1545	Open in IMG/M
JGI24815J26687_1016135	Not Available	1533	Open in IMG/M
JGI24815J26687_1018531	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp.	1390	Open in IMG/M
JGI24815J26687_1019655	Not Available	1335	Open in IMG/M
JGI24815J26687_1023261	All Organisms → cellular organisms → Archaea	1183	Open in IMG/M
JGI24815J26687_1025613	Not Available	1105	Open in IMG/M
JGI24815J26687_1027847	All Organisms → Viruses → Predicted Viral	1041	Open in IMG/M
JGI24815J26687_1031721	Not Available	951	Open in IMG/M
JGI24815J26687_1033474	Not Available	915	Open in IMG/M
JGI24815J26687_1035877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	874	Open in IMG/M
JGI24815J26687_1037561	Not Available	846	Open in IMG/M
JGI24815J26687_1038960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	825	Open in IMG/M
JGI24815J26687_1040950	Not Available	798	Open in IMG/M
JGI24815J26687_1044699	Not Available	752	Open in IMG/M
JGI24815J26687_1045317	Not Available	745	Open in IMG/M
JGI24815J26687_1046013	Not Available	737	Open in IMG/M
JGI24815J26687_1053344	Not Available	669	Open in IMG/M
JGI24815J26687_1057439	Not Available	638	Open in IMG/M
JGI24815J26687_1058498	All Organisms → cellular organisms → Archaea → Euryarchaeota	631	Open in IMG/M
JGI24815J26687_1058679	Not Available	630	Open in IMG/M
JGI24815J26687_1059401	Not Available	625	Open in IMG/M
JGI24815J26687_1062909	Not Available	603	Open in IMG/M
JGI24815J26687_1063075	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	602	Open in IMG/M
JGI24815J26687_1063397	Not Available	600	Open in IMG/M
JGI24815J26687_1065198	Not Available	590	Open in IMG/M
JGI24815J26687_1074910	Not Available	541	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24815J26687_1001804	JGI24815J26687_10018044	F049215	VRWLLIAFVAYLXSCTEPTKYVTRELTIWNKYVSNGYDNYXDEIEVNLKLGSRDWFWLYDSGDRVKIYNNSSFNWQFEFPEDFDSLYVHARFYYTKDIIIELVVADTALRMDSDKTLMFWNCGDTTVVEYPFPACLTEVDSL*
JGI24815J26687_1003027	JGI24815J26687_10030275	F083802	MKEKITITTRDIEKEKIGHSKWLKHKESRFNXLFPKRLEKVYLTXRSLSKLSNKNNYFYEPNNIVRALSSIVIELRELAASYGLDSSNIKIDLHPLTGEQIKPNLKREDTRNSDAKDIAFELLEIIEKKIKTEEKLHSEINTLKRELSFLRDKVENQQWSSTRNFT*
JGI24815J26687_1003487	JGI24815J26687_10034875	F101330	MWLQNNYTVSFFGFXGVCIGYFTGXQEICIMIGVGXGXLIRYLSGKTK*
JGI24815J26687_1010088	JGI24815J26687_10100881	F098022	MKKVFPVKLLDAARFSFPASQCFSIIKERIFKERFFTFKAEERLLKDTDSFCAGTKSGHSLAETGLPAAHSAL*
JGI24815J26687_1010931	JGI24815J26687_10109315	F048926	MDYDNIRAELKVRLETVSSPQAFVSVYDYVPDFLTPPCAIIVPSNNAITFHEAMGTVAAGLATCRFDIVVAAQRFESTSNQELLNDYLVTVPTALEADQTLDGEATACTVIAARNYGPLNFGDSVYLGVQFDVSVIA*
JGI24815J26687_1010984	JGI24815J26687_10109841	F098016	LSQRPLSPSGLPDEASADERLAQVSDDLPEPRLVLPLDDEEPDAPVLEDNAPVSLNGLSQHPADLGQHAAPSIELLLTRPDPAAAGSTVAQPILPGSQPVSPVPGWMSVADLQEPEDQLFLPEMPIGLPVELAEPVAAVFTNGASDAPLAEVPLPEPTSVSEIELVDADLDGWMASLESPSMFLDVPPVQVAMNDTVVRNVWVDD
JGI24815J26687_1015961	JGI24815J26687_10159612	F084705	MLSLQAIIALTYVPSVPLIAFSVVAGKENKVKXQKWYRFFGCILFIIAAVAYVFFLGEILSN*
JGI24815J26687_1016135	JGI24815J26687_10161352	F097500	FRSHILILIGQEQEIKRYRRKLWLSLFLAVGSLSLLFSQISEIANDFTVGLSDAITGDVLTIANDFTVGLSDAITGDVLTTVVFSYGLLFALLALLNKPDFIFN*
JGI24815J26687_1018531	JGI24815J26687_10185312	F060826	MADDWVFTFSNPTVFFDVDDTLVMWDESLPGDNVAIECNGHLNHMVINKGNLEELKRHGARGIDVIVWSKGGYDWAHSVVRALKIEKYVAAVMTKPFCYYDDLKNPL
JGI24815J26687_1019655	JGI24815J26687_10196553	F087736	MMKMVATMHVITITGKPTLAHSLVVIGRGPRSLMATVMTFALEPIGVALPPNPAPIARAQNS
JGI24815J26687_1023261	JGI24815J26687_10232612	F009558	MYHDYCRHKTWEAKHYWVNEFGVIEHDIFAHIPPQHYVVKWKRGVDKCEKHFDNKKKAQAFFRTVRKTATHFIRIVKWH*
JGI24815J26687_1025613	JGI24815J26687_10256131	F089023	VQPYATGSVSLGSAEEPYDSDMTHSYRLTAGQLIPYP
JGI24815J26687_1027847	JGI24815J26687_10278471	F066918	MKLLDQLVEERQTISETQTGLVTRAADEERDLTETEDTNLKELATRAEELDTRIAELRAVQVANLEAAKLRAEVSNTDDT
JGI24815J26687_1031721	JGI24815J26687_10317212	F090267	MVEQSHGRHREAAEIVLATVPQANASLCTTLRGIADAWDNVEKGVYDPKLITGISVQLFKCLDRLGIESDHDVWEDLSRELTR*
JGI24815J26687_1033474	JGI24815J26687_10334741	F070221	RGFLFVGGWVDLVMIRYISLLLFIGLAFWGCEDSENNATNETGDFYISNEFLRCGQTYQVTISLPSNDTIGIVYNIEWNNLIKKLPRPVSYNDELIRVDTIFTEYDQCGNAIFTDYKMLSDYPDSTGIPDHPVDSVRNTYTDYWKLIQSISYYKYWDNSISNFTWDGLTRIKVDDPNSYTIHNEYGISLGNSFMQVETMDDGKRIKSKNMSDGSISWTYEWDGYSYEMWMNSSTNQSGYQTGTIDEYANTIEYISYDCSVDPCVPTWKTIFEFDCTMFEPIPM*
JGI24815J26687_1035877	JGI24815J26687_10358771	F083802	MKKTITITKTDVLKGKMGHSKWLRHKESRFNALFPKRLEKVYSTIRSLSKLSNRNNYFYEPSKISTALSLIMFELRELAASYGLDSSDIRIEIHPLTNQQTKPTLRTEDIKNNDAKDIASELLEIIENKIKTEESLXSEINALKRELSFLRDKVENQQWSXTRNFT*
JGI24815J26687_1037561	JGI24815J26687_10375613	F056891	EKPSECINEERDEWHPGLIPEWDGTMPQGQMCQRPDGFARDRDNLGTCGNEAQVGVPFAHWDEAAIENESDTPSIEFHYFCEECAAEWEAEDDMLTSYFEACEELGWCGGIXXADISRLMNGEVTIXDXAIERYTEYATWCIEDGELEEAAKIISRLIDAKGGE*
JGI24815J26687_1038960	JGI24815J26687_10389602	F060979	PIQDDDSGGSFLTDPGTLAAAAGVAAAVGLGLSGLGSKLLGGXLRFLGGTGFGLYLIGLFRRDKRPGPPIDFTIFTDGPLTHLAWSSPTTGGPAEKYVLEGRKDGRWGELLDFDAENTRAAVPTSEVEDAEAWRLRAVNDHGMGKPSDASLADTPKRAGNDTPDET*
JGI24815J26687_1040950	JGI24815J26687_10409501	F101354	TFVGFFVCGMKGRFEFIMKLILFIFVISSVFSQEIDSQEIETEKLRIAVLNASRNSQRVIVEVFTGTL*
JGI24815J26687_1044699	JGI24815J26687_10446991	F084705	GFMLSPQALFALTYVSAVPLIAFSIETDMNNNPRAKKWYGVFGVIFFVIAVVAYIFFLIELLSY*
JGI24815J26687_1044699	JGI24815J26687_10446992	F081443	MVVERVAKKPLDFQEKFLIGPMGRCHINNAFSLFQEQQPSFTLERFLKLWGNASPHKINQRDVIVARSSNDYIHGLYVYSATPKKKFEIEHLIIPGPIARQTILKXFIEHMIRXGLDLQCSVISIYHLNENDWRSLFLQEAGAKRVKPDCLQINLLS*
JGI24815J26687_1045317	JGI24815J26687_10453171	F080484	WTKRGPSCCGLYFGCGMALWLAVGLSDHTINARKDPNANNILDSFAGIFIALHLFDVYTQTKKYNRNLSMSIFGQKTPPPTLGTIFPLKTNYIQYFNFFGFPNHRTGIGMFGYSITKRTKKNNEYYMGIGTAIINLSITAGWKYYFKKSNADDYYLAMSLVGSTLEIDDRYDETKKVSKDFIAGNFSAGYEKRLSKNMYLNMEIFTLTGIMPNSKGVTDGIRYLVAPSFHFNYRI*
JGI24815J26687_1046013	JGI24815J26687_10460132	F092694	GHRSRACSGRAGGQIIAIHELDQRTRTVTFCEARVQVGFPDYLLVDMGIFELAAWFKAMRERLGDTQKVAEFEKIEVPGDLVIELVKGTKGRFHHRGVTEHDIKLSADDAARLFKPDSTYTVELFEV*
JGI24815J26687_1053344	JGI24815J26687_10533442	F029236	MNDAMKMIEEWLASSKAWLELESARLKLEAETRLWEAENEVFSPGAGCYDWEFIDEWV*
JGI24815J26687_1057439	JGI24815J26687_10574393	F101349	MNKTNGIDDKIVDLDAFRKEKYTLNICVGGYYANLELGVYLHVVGITDPMHTKNAEQHFI
JGI24815J26687_1058498	JGI24815J26687_10584982	F005684	VYDTEESPLSKMRAVRFKPEVREGRLCNRNEPRQAYYDPVRVRFPDRGWNEQPRWSKSKQVLSASTGPGRMHS*
JGI24815J26687_1058679	JGI24815J26687_10586792	F064788	MEYTEKQLKFLSAAIVKYGEGAVLAKETISEIADENGLKFPFWLTDARRMGSFTKVDKDTYRLPALNGGEGASIADVVVSSPAVVDKAAEVVVESKNTESTLDMATYF
JGI24815J26687_1059401	JGI24815J26687_10594011	F056891	MAPRPNPRVGRNNAASINEERDEWHPGLIPEWDGTMPQGQMCQRPDGFARDNLGTCGNEAQVGSPYARWDKTAIENDSDTPSSIEFHYFCEECFAEKEAEDEMIGAYFEACEEMFPEFWAGINEPNTSRLMNGEVTIYDLAIEE
JGI24815J26687_1062909	JGI24815J26687_10629091	F098016	LSQRPLSPSGLPDEASADERLAQVSDDLPEPRLVLPLDDEVVLPLDDEEPDAPVLEDNAPVSLNGLSQHPADLGQHAAPSIELLLTRPDPAAAGSTVAQPILPGSQPVSPVPGWMSVADLQEPEDQLFLPEMPIGLPTELAEPVAAV
JGI24815J26687_1063075	JGI24815J26687_10630752	F002129	MNFTPVNSYLSVRSLEETDDDNSGILLPQDYRAVDSPFAVVEVVNCSGESGTLWGTGLRIVVEAHMLRDIQHNGDTFTVIKENHVIGILTDS*
JGI24815J26687_1063397	JGI24815J26687_10633971	F033215	LERDALSVNKTLVLVLVKVSATTKRPPRLRVVFEVLNEAPLANVAPLGSPRVPPVEERVPAVALIPPLSDKSAPPVIICSEAASRVTGCAMLNPAIALSSVKAKLAKSSVPTVRVALSSIVEFAAKRRVVELSGLTPLKSCVPSTSRILLLLRESALSFVVNVVFFVFSVAPASDKAFCRTNVVSGSEILVPDDALAPE
JGI24815J26687_1065198	JGI24815J26687_10651982	F002348	MNEKHIKYGGWLFSLLLISAGAWFIWPRIHINLLGVVLVYIGIRIFNFATWDEYKEKRIEVLNKLS*
JGI24815J26687_1074910	JGI24815J26687_10749101	F006717	MTEIWIALVLTWFPVERVIDKEFSTEKECWDYYETIIAPDTTLAEGKWGKQNLTSQDRRPDKNFHFKTNWTYPIRTYKGIGATGKGEDQVWLSCELKYPKIYNQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002178: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_150m

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences