3300002117: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-10

Overview

Basic Information

• IMG/M Taxon OID: 3300002117
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0056003 | Ga0004427
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-10
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4313299
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.2958
  • Long. (^o): -89.3799
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038480	Metagenome	166	Y
F054841	Metagenome / Metatranscriptome	139	Y
F098176	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24233J26641_100008	Not Available	1497
JGI24233J26641_100682	Not Available	516
JGI24233J26641_100687	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24233J26641_100008	JGI24233J26641_1000081	F098176	MRPGLVASYRNTSETLVPRGRKRNRMYLGLLRADLLENDGTIIAGDATAVRSAMNELNTALEGITDADPIFAPQGLAIVSPTAGECYEVNEVGCGEAVDTHRSRRQKEPENMIWQAAS*
JGI24233J26641_100682	JGI24233J26641_1006821	F038480	KPNMEGACRVVADRGSSQMKLGRKSGKIVRRDTMKAILVSIVLYFAATAAHSMPISVLNANGLSATIPISDQCGDRCGSSRSYVKDRRSGVGGYSGGYVLVRDPLIQRRPFCPFGSYVACVVSGTYCVDLCH*
JGI24233J26641_100687	JGI24233J26641_1006871	F054841	MQIQVTSIRRRSNGTVDMDVYRRKAFLLRRETTNQILRRLGRSVLPRLIGAIAILVSYVLFLPRNPLPQGAGSTFAPAK