3300002036: Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_BI_B3

Overview

Basic Information

• IMG/M Taxon OID: 3300002036
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0103015 | Gp0060496 | Ga0016875
• Sample Name: Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_BI_B3
• Sequencing Status: Permanent Draft
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 713039852
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Delisea Pulchra Microbial Communities From Sydney, Australia, Affected By Bleaching Disease
• Type: Host-Associated
• Taxonomy: Host-Associated → Algae → Red Algae → Ectosymbionts → Unclassified → Delisea Pulchra → Delisea Pulchra Microbial Communities From Sydney, Australia, Affected By Bleaching Disease

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Bare Island, Sydney, Australia
• Coordinates
  • Lat. (^o): -33.59
  • Long. (^o): 151.13
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000532	Metagenome / Metatranscriptome	1046	Y
F025141	Metagenome / Metatranscriptome	203	Y
F037503	Metagenome / Metatranscriptome	168	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
BIB32012_10037837	All Organisms → cellular organisms → Bacteria	1757
BIB32012_10062974	All Organisms → cellular organisms → Bacteria	1320
BIB32012_10117513	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	886
BIB32012_10135970	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	801

Sequences

Scaffold ID	Protein ID	Family	Sequence
BIB32012_10037837	BIB32012_100378372	F000532	VTLIKKRLNIEAVTAPGQKGQFEVVVDGESLVERGGNWFTRSFGAGYPDLESVVEQLEKRHAT*
BIB32012_10062974	BIB32012_100629742	F037503	MEVELLIGLGGFTAYQPLTNSECHDTTSAVRLWVLRSIAERETTQTIS*
BIB32012_10117513	BIB32012_101175131	F025141	MIQCEYCTRGFVDTANGLVAKTFHELLHEPDVVNK*
BIB32012_10135970	BIB32012_101359702	F025141	MIECEYCPREFIETANGLAEKTFHELLHEPEVVNK*