Sample 3300001869

Overview

Basic Information
IMG/M Taxon OID	3300001869 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0084162 \| Gp0055560 \| Ga0016730
Sample Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-33A
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	214654460
Sequencing Scaffolds	12
Novel Protein Genes	14
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	5
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	polar biome → polar → peat soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Barrow, Alaska, USA
Coordinates	Lat. (^o)	71.290884	Long. (^o)	-156.788063	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004441	Metagenome / Metatranscriptome	438	Y
F014092	Metagenome / Metatranscriptome	266	Y
F029738	Metagenome	187	Y
F053674	Metagenome	141	Y
F079367	Metagenome	116	Y
F084901	Metagenome	112	N
F087142	Metagenome	110	N
F088782	Metagenome	109	N
F090156	Metagenome	108	Y
F096256	Metagenome	105	N
F104110	Metagenome / Metatranscriptome	101	N
F106196	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F004441

Metagenome / Metatranscriptome

438

F014092

Metagenome / Metatranscriptome

266

F029738

Metagenome

187

F053674

Metagenome

141

F079367

Metagenome

116

F084901

Metagenome

112

F087142

Metagenome

110

F088782

Metagenome

109

F090156

Metagenome

108

F096256

Metagenome

105

F104110

Metagenome / Metatranscriptome

101

F106196

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
JGI24147J20444_1000363	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	31116	Open in IMG/M
JGI24147J20444_1003636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6202	Open in IMG/M
JGI24147J20444_1006209	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4351	Open in IMG/M
JGI24147J20444_1008610	Not Available	3512	Open in IMG/M
JGI24147J20444_1011464	Not Available	2873	Open in IMG/M
JGI24147J20444_1014048	All Organisms → cellular organisms → Bacteria	2493	Open in IMG/M
JGI24147J20444_1029782	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	1341	Open in IMG/M
JGI24147J20444_1029923	Not Available	1335	Open in IMG/M
JGI24147J20444_1044164	All Organisms → cellular organisms → Archaea → Euryarchaeota	909	Open in IMG/M
JGI24147J20444_1044327	Not Available	904	Open in IMG/M
JGI24147J20444_1075260	Not Available	535	Open in IMG/M
JGI24147J20444_1077582	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI24147J20444_1000363

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales

31116

Open in IMG/M

JGI24147J20444_1003636

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

6202

Open in IMG/M

JGI24147J20444_1006209

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

4351

Open in IMG/M

JGI24147J20444_1008610

Not Available

3512

Open in IMG/M

JGI24147J20444_1011464

Not Available

2873

Open in IMG/M

JGI24147J20444_1014048

All Organisms → cellular organisms → Bacteria

2493

Open in IMG/M

JGI24147J20444_1029782

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae

1341

Open in IMG/M

JGI24147J20444_1029923

Not Available

1335

Open in IMG/M

JGI24147J20444_1044164

All Organisms → cellular organisms → Archaea → Euryarchaeota

909

Open in IMG/M

JGI24147J20444_1044327

Not Available

904

Open in IMG/M

JGI24147J20444_1075260

Not Available

535

Open in IMG/M

JGI24147J20444_1077582

All Organisms → cellular organisms → Bacteria

520

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI24147J20444_1000363	JGI24147J20444_10003632	F084901	METQRNTYYTTDRREQYKRRAFEADLLKLVIAVVAELVIFFIWFDGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARAIGIDISHSLVILPLVFLAAFLPFVRRPKTALIAGYAAFAIYASHLIVDTRKYAIIENVGGYLWNNMVLYVLLLTVIGFLLVQLLRFSDTNKMAEEL*
JGI24147J20444_1003636	JGI24147J20444_10036364	F090156	MTHDMRTANQTMSDNEQPLELSPELRREVVALFAPMDRSLASSVTAVIGARRSRRRLLQGLWLGLSPIMAIAIVAVLYVGGAVLQPASLPATSSRALLAPNPRFGIADAAPKGLAGSENVPTVATACQVLSFRVMLKGDIARRQLLATWLRARHADVALELDTAAPGQDIPLTLEPDEVRGFEALMVLHGFTGQQSSGLSTVAGCSPASWASSLGTSSLFICLIP*
JGI24147J20444_1006209	JGI24147J20444_10062092	F014092	MKKLLIVIALFIAVMAVNAQVINTTDSTRTVVKVADLQKAITDNIAKDYVGYTIKEATSVTANNIVTFEVVVVKGTATEVLVYDKEGIFVKKLPPVPKK*
JGI24147J20444_1008610	JGI24147J20444_10086101	F084901	LKLVIAVVAELVIFFIWFDGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARVIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKYAIIENVGGYLWNNMVLYALLLTLIGFLLVQLLRFSVTNKMAEEL*
JGI24147J20444_1011464	JGI24147J20444_10114643	F079367	MATNLDKAGAKIKKMLTRGDVADDKFQHKDDIAWWMGRYETLITTEADAVVRKAMAKLNEAVALREEGINLVEQLDRDIIEAESEITRLGGAAFIEKSEPMIEELKVYYDNLYESLKRPQSEEVEK*
JGI24147J20444_1014048	JGI24147J20444_10140485	F029738	MITAKFSSNCSKCKTKLLKGTTIYYWPSSREVFCTKCGEGPYRQFLSSAADEDVYNGCGNPYAY*
JGI24147J20444_1029782	JGI24147J20444_10297823	F087142	MTEFQFLENLEFYQRRFEKHHYKFIRDLNLYIRINRVHDSVFFNTVLNYSLNITLTASWIKLLKDFNSDKYNNILRFSTDFNNLNGVPDAKINPTGSGNHE*
JGI24147J20444_1029923	JGI24147J20444_10299233	F053674	MKKVLIVLVLIMAVMVVNAQVTNTTDSTRTVVKVADLQKAITDNIAKD
JGI24147J20444_1044164	JGI24147J20444_10441643	F106196	MTQDDKNETIKCTVSCPECGAEMICTHEDSKHEEK
JGI24147J20444_1044327	JGI24147J20444_10443271	F096256	VRMGSRKLESMLVTAMIATVLISGCLSSLPLGSTPTATPQDLSVSYDASFVLSGWHAISKFSQIKPKTYVGAYADAKGQSWNFTVELFSAENTSYNRYFELMKTRSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPTLFALFFGYDKTADSWVVATAASGATIITQTTSALS*
JGI24147J20444_1048350	JGI24147J20444_10483502	F104110	SSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
JGI24147J20444_1050887	JGI24147J20444_10508871	F104110	SSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNDRVVTRSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
JGI24147J20444_1075260	JGI24147J20444_10752601	F088782	RFQAHAGNLCCLYRDHIMSWLDLPPLELIGAAPDPVVTPEENGLVKGMLGLVAGGLVGFWTTSTVEIWHPDNPAALAAILGVGEVERMDTGTGFAECGLFDREKKVLRVRNRNPQSGPPRVFPGRTTGVPNPDLDPRAVWQLTHMVDVALRRDERWALAPGGHGSSDYSLGLETGPWQ
JGI24147J20444_1077582	JGI24147J20444_10775821	F004441	SAKVKGTAMQMNDVFFLPGDDPSGWKVTSSVKKNDSNKLGSFVTVNLHGTKSGQLDFDYQISVSQNYNDIIVSLGRTNTTGKSVDLQDMDYFVSNDTRLGSTTDRWISLGTQSQNRELYDLWPVINLITPRMYIVNHVIRDSDTGNSLLMGHVTANKGASRFEISSGWQGKTP

Scaffold ID

Protein ID

Family

Sequence

JGI24147J20444_1000363

JGI24147J20444_10003632

F084901

METQRNTYYTTDRREQYKRRAFEADLLKLVIAVVAELVIFFIWFDGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARAIGIDISHSLVILPLVFLAAFLPFVRRPKTALIAGYAAFAIYASHLIVDTRKYAIIENVGGYLWNNMVLYVLLLTVIGFLLVQLLRFSDTNKMAEEL*

JGI24147J20444_1003636

JGI24147J20444_10036364

F090156

MTHDMRTANQTMSDNEQPLELSPELRREVVALFAPMDRSLASSVTAVIGARRSRRRLLQGLWLGLSPIMAIAIVAVLYVGGAVLQPASLPATSSRALLAPNPRFGIADAAPKGLAGSENVPTVATACQVLSFRVMLKGDIARRQLLATWLRARHADVALELDTAAPGQDIPLTLEPDEVRGFEALMVLHGFTGQQSSGLSTVAGCSPASWASSLGTSSLFICLIP*

JGI24147J20444_1006209

JGI24147J20444_10062092

F014092

MKKLLIVIALFIAVMAVNAQVINTTDSTRTVVKVADLQKAITDNIAKDYVGYTIKEATSVTANNIVTFEVVVVKGTATEVLVYDKEGIFVKKLPPVPKK*

JGI24147J20444_1008610

JGI24147J20444_10086101

F084901

LKLVIAVVAELVIFFIWFDGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARVIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKYAIIENVGGYLWNNMVLYALLLTLIGFLLVQLLRFSVTNKMAEEL*

JGI24147J20444_1011464

JGI24147J20444_10114643

F079367

MATNLDKAGAKIKKMLTRGDVADDKFQHKDDIAWWMGRYETLITTEADAVVRKAMAKLNEAVALREEGINLVEQLDRDIIEAESEITRLGGAAFIEKSEPMIEELKVYYDNLYESLKRPQSEEVEK*

JGI24147J20444_1014048

JGI24147J20444_10140485

F029738

MITAKFSSNCSKCKTKLLKGTTIYYWPSSREVFCTKCGEGPYRQFLSSAADEDVYNGCGNPYAY*

JGI24147J20444_1029782

JGI24147J20444_10297823

F087142

MTEFQFLENLEFYQRRFEKHHYKFIRDLNLYIRINRVHDSVFFNTVLNYSLNITLTASWIKLLKDFNSDKYNNILRFSTDFNNLNGVPDAKINPTGSGNHE*

JGI24147J20444_1029923

JGI24147J20444_10299233

F053674

MKKVLIVLVLIMAVMVVNAQVTNTTDSTRTVVKVADLQKAITDNIAKD

JGI24147J20444_1044164

JGI24147J20444_10441643

F106196

MTQDDKNETIKCTVSCPECGAEMICTHEDSKHEEK

JGI24147J20444_1044327

JGI24147J20444_10443271

F096256

VRMGSRKLESMLVTAMIATVLISGCLSSLPLGSTPTATPQDLSVSYDASFVLSGWHAISKFSQIKPKTYVGAYADAKGQSWNFTVELFSAENTSYNRYFELMKTRSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPTLFALFFGYDKTADSWVVATAASGATIITQTTSALS*

JGI24147J20444_1048350

JGI24147J20444_10483502

F104110

SSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*

JGI24147J20444_1050887

JGI24147J20444_10508871

F104110

SSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNDRVVTRSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*

JGI24147J20444_1075260

JGI24147J20444_10752601

F088782

RFQAHAGNLCCLYRDHIMSWLDLPPLELIGAAPDPVVTPEENGLVKGMLGLVAGGLVGFWTTSTVEIWHPDNPAALAAILGVGEVERMDTGTGFAECGLFDREKKVLRVRNRNPQSGPPRVFPGRTTGVPNPDLDPRAVWQLTHMVDVALRRDERWALAPGGHGSSDYSLGLETGPWQ

JGI24147J20444_1077582

JGI24147J20444_10775821

F004441

SAKVKGTAMQMNDVFFLPGDDPSGWKVTSSVKKNDSNKLGSFVTVNLHGTKSGQLDFDYQISVSQNYNDIIVSLGRTNTTGKSVDLQDMDYFVSNDTRLGSTTDRWISLGTQSQNRELYDLWPVINLITPRMYIVNHVIRDSDTGNSLLMGHVTANKGASRFEISSGWQGKTP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001869: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-33A

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences