x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy.
OK
Sample 3300001865
3300001865: Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 5
Overview
| Basic Information |
| IMG/M Taxon OID | 3300001865 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0046201 | Gp0057198 | Ga0004147 |
| Sample Name | Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 5 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 210636371 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information |
| Location | Lawrence Berkeley National Laboratory, California, USA |
| Coordinates | Lat. (o) | 37.8754404 | Long. (o) | -122.2477251 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
|
|
| Zoom: |
Powered by OpenStreetMap © |
Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F062236 | Metagenome / Metatranscriptome | 131 | Y |
| F067178 | Metagenome | 126 | Y |
| F069434 | Metagenome / Metatranscriptome | 124 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| JGI2065J20421_1000162 | JGI2065J20421_100016227 | F062236 | LERWGKQFAKTVENRIEGQSDFALDLIDSLQQKAEEFNEEFPKNSRFSVAVLSKGEDVEVSNGYKTASAISTRLPGAIFVRVWNNISERSFEAVLHNTPDGFQPDGLPSECSDPEGLAEWMVHEIFEP* |
| JGI2065J20421_1000316 | JGI2065J20421_10003165 | F069434 | MKHIFDRTTCWNIFDHAEDPERYWALQRAGLHEKARKAAIRLTLKHPLRMISVIIACARCG* |
| JGI2065J20421_1000336 | JGI2065J20421_100033659 | F069434 | MKRIFDKATCWNIFDHAKDPERYWALQHAGLHDAARTAAIFLTLRHPLRMIPVIIACARYG* |
| JGI2065J20421_1000422 | JGI2065J20421_100042222 | F067178 | LAGMVASEVGITVSVELLVRHAHLSLATILVYRSLLALALLALIVRPARNQWLPRSPRLALLRVVTGGLTFIGWFGAIGLLSGRVTQSVLLLDSLILAYVRGDHRSYERRTLFVLTTALILFAAQAVREPGTILNAGRGIVFLTIALASRAATYKVWERAQRKDEHLFWLIAPALLGGALGGVFLGVASQSGIQRLSPLMWCAMLLVAMVGLTGYFYMNTVMSLLGAFYTRVVELWQVPMLWAIHLLTDYAGIDWLQGALGTLVACASAYAYLQHRRGQIPKIQPR* |
