3300001819: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM37, ROCA_DNA077_2.0um_10k

Overview

Basic Information

• IMG/M Taxon OID: 3300001819
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0096913 | Gp0056342 | Ga0016783
• Sample Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM37, ROCA_DNA077_2.0um_10k
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6884006
• Sequencing Scaffolds: 12
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2
All Organisms → Viruses → Predicted Viral	2
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED236	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → plume front → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 4.8818
  • Long. (^o): -51.3608
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002907	Metagenome / Metatranscriptome	521	Y
F011217	Metagenome / Metatranscriptome	293	Y
F017108	Metagenome / Metatranscriptome	242	Y
F020350	Metagenome / Metatranscriptome	224	N
F022640	Metagenome / Metatranscriptome	213	Y
F028179	Metagenome / Metatranscriptome	192	N
F031080	Metagenome / Metatranscriptome	183	Y
F032301	Metagenome / Metatranscriptome	180	N
F035678	Metagenome / Metatranscriptome	171	Y
F043607	Metagenome / Metatranscriptome	156	Y
F067655	Metagenome	125	Y
F076118	Metagenome / Metatranscriptome	118	Y
F100690	Metagenome / Metatranscriptome	102	N
F104550	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
ACM37_100208	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	5122
ACM37_101221	All Organisms → Viruses → Predicted Viral	1360
ACM37_101642	Not Available	853
ACM37_102837	All Organisms → Viruses → Predicted Viral	1033
ACM37_103512	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae	859
ACM37_103529	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	565
ACM37_103990	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	673
ACM37_104690	All Organisms → cellular organisms → Bacteria	680
ACM37_107017	Not Available	501
ACM37_107093	Not Available	786
ACM37_107603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED236	788
ACM37_108943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
ACM37_100208	ACM37_10020814	F011217	MEMNRYCIEVDRIEPNGEIFTLVEYRNLKATKSTIGRDRQLNNLVNRIGEELRYYHQNLTDLRY*
ACM37_101221	ACM37_1012216	F031080	MNEFFEIADAPGEIFDIPELQDLDEDDRFDLNEYLMGNFDY*
ACM37_101642	ACM37_1016421	F032301	VASKLSPQQADGFFYQGDMKIREKGNFFVNRSVPENFQWENFLGQVPTESLRTQDSENVYERWVQQIFDPVLVARSWEMPVKCELPAKIGWCXXXXXXXXXXXXAKSS*
ACM37_102837	ACM37_1028374	F002907	MTKQNPYWFFQKWGIEEHSPLETLAEKVEQLEERIKLIEQEMVEQSNALYECWNSLDARIDILAEHKTDV*
ACM37_103512	ACM37_1035123	F028179	MEHINRPYLWTTIDIKNTELINLARYLGFKVLRVFPDGPDNVYSIEIVRLWQKDKVP*
ACM37_103529	ACM37_1035291	F017108	MNSNDPRSSDFSYKKYSLEQLDNWVNDAVNCEDLTPQDIYDTIIKCVDESVEYHKKY
ACM37_103990	ACM37_1039901	F067655	RREHHVNENLRRANAKRRQYDYVAGQLVLKKVHKPTKLGVRTEGPYKVQRVHVNGTLTIELRPGLTERINIRRLIPYRSTDNPA*
ACM37_104690	ACM37_1046902	F076118	MRIDQPSFSGSITQAPSAYAELSGSFTGSFSGSVTGSFTGDITVEQAEFTDLIVRQTLNVGTTNTGSITNIINSGSVEVSGSINVTQGNSFTVEGVDVLDSALAFS
ACM37_107017	ACM37_1070171	F022640	MRIALLIATLAMGLKVGLAAHATVNEYQEQQADRFCQVDPNYCNSK*
ACM37_107017	ACM37_1070172	F100690	ENNATQMTLFSEGWKAEQYWGSELTAIHMRSASVYHFIENNDISIKHTAVRKNNEWVDQFVVYHHTVTAYHESGNVLSSENNPVESFDNWLDAYYCGVQCVNNLNMELIAN*
ACM37_107093	ACM37_1070932	F020350	MTQAIGPIDLLTLKTNNRLLKPKHHVTTQQVRATLEELSHLLDKAVDHKDVDSLDVYSIINCIRLMARTPSDCFELHQ*
ACM37_107603	ACM37_1076033	F043607	MEEKYIKFYKNFHKKFKNDKDLIHCSKTLNDR*VVSSDE*DN*
ACM37_108943	ACM37_1089432	F035678	MSEEKKYSKYRIDQLAKELDGKWYHQTVSNNRTEYKRIVIEYGTKRKGEDL*
ACM37_109048	ACM37_1090481	F104550	MELTKSFPPADAFVEMMTEIDYKKHFNTFMDGVEIFCAFVAAVSTILWEKIQVMKFRTPDFLSDYVYFSVNMICEPGDEIVGFSVGNRYVGLYNNGIAWGVLNAQGALDNR*