Sample 3300001817

Overview

Basic Information
IMG/M Taxon OID	3300001817 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0096913 \| Gp0056344 \| Ga0016814
Sample Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM56, ROCA_DNA136_2.0um_27k
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	4980358
Sequencing Scaffolds	16
Novel Protein Genes	18
Associated Families	18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
Not Available	6
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1
All Organisms → Viruses	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SCGC AAA076-E13	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → plume front → planktonic material
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Amazon River plume to Atlantic Ocean
Coordinates	Lat. (^o)	12.4145	Long. (^o)	-52.2197	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000802	Metagenome / Metatranscriptome	885	Y
F001479	Metagenome / Metatranscriptome	687	Y
F001504	Metagenome / Metatranscriptome	681	Y
F003869	Metagenome / Metatranscriptome	464	Y
F005118	Metagenome	411	Y
F006794	Metagenome	364	Y
F012583	Metagenome / Metatranscriptome	279	Y
F016980	Metagenome	243	Y
F020922	Metagenome / Metatranscriptome	221	N
F023367	Metagenome / Metatranscriptome	210	N
F025306	Metagenome / Metatranscriptome	202	N
F047727	Metagenome	149	N
F059072	Metagenome / Metatranscriptome	134	N
F061921	Metagenome	131	Y
F075646	Metagenome / Metatranscriptome	118	Y
F089049	Metagenome / Metatranscriptome	109	Y
F093972	Metagenome / Metatranscriptome	106	N
F103391	Metagenome	101	N

Family

Category

Number of Sequences

3D Structure?

F000802

Metagenome / Metatranscriptome

885

F001479

Metagenome / Metatranscriptome

687

F001504

Metagenome / Metatranscriptome

681

F003869

Metagenome / Metatranscriptome

464

F005118

Metagenome

411

F006794

Metagenome

364

F012583

Metagenome / Metatranscriptome

279

F016980

Metagenome

243

F020922

Metagenome / Metatranscriptome

221

F023367

Metagenome / Metatranscriptome

210

F025306

Metagenome / Metatranscriptome

202

F047727

Metagenome

149

F059072

Metagenome / Metatranscriptome

134

F061921

Metagenome

131

F075646

Metagenome / Metatranscriptome

118

F089049

Metagenome / Metatranscriptome

109

F093972

Metagenome / Metatranscriptome

106

F103391

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
ACM56_100076	All Organisms → Viruses → Predicted Viral	1058	Open in IMG/M
ACM56_100536	Not Available	1217	Open in IMG/M
ACM56_100630	Not Available	1244	Open in IMG/M
ACM56_101260	All Organisms → Viruses → Predicted Viral	1327	Open in IMG/M
ACM56_101769	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	802	Open in IMG/M
ACM56_102567	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	768	Open in IMG/M
ACM56_103907	All Organisms → Viruses	522	Open in IMG/M
ACM56_103962	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	582	Open in IMG/M
ACM56_104785	All Organisms → Viruses	805	Open in IMG/M
ACM56_105666	Not Available	705	Open in IMG/M
ACM56_106188	Not Available	630	Open in IMG/M
ACM56_107988	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	604	Open in IMG/M
ACM56_108281	Not Available	567	Open in IMG/M
ACM56_108625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	506	Open in IMG/M
ACM56_108684	Not Available	593	Open in IMG/M
ACM56_109179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SCGC AAA076-E13	540	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

ACM56_100076

All Organisms → Viruses → Predicted Viral

1058

Open in IMG/M

ACM56_100536

Not Available

1217

Open in IMG/M

ACM56_100630

Not Available

1244

Open in IMG/M

ACM56_101260

All Organisms → Viruses → Predicted Viral

1327

Open in IMG/M

ACM56_101769

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae

802

Open in IMG/M

ACM56_102567

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae

768

Open in IMG/M

ACM56_103907

All Organisms → Viruses

522

Open in IMG/M

ACM56_103962

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

582

Open in IMG/M

ACM56_104785

All Organisms → Viruses

805

Open in IMG/M

ACM56_105666

Not Available

705

Open in IMG/M

ACM56_106188

Not Available

630

Open in IMG/M

ACM56_107988

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

604

Open in IMG/M

ACM56_108281

Not Available

567

Open in IMG/M

ACM56_108625

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37

506

Open in IMG/M

ACM56_108684

Not Available

593

Open in IMG/M

ACM56_109179

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SCGC AAA076-E13

540

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
ACM56_100076	ACM56_1000762	F000802	MTIDEYKDLILEDEINIGYDVEDDDLPDQYDDESYIDGLLTTGFHAVDASEMFGEEVVGYSLY*
ACM56_100536	ACM56_1005362	F025306	MKLNRKESEAELETIERAMDDYMCYHDPNTPSDLIGGLPVDERVNDIMIKITEAYANL*
ACM56_100630	ACM56_1006301	F075646	MTFPPLIIWAKALFFFEQLFPVVARTWLESKSECLFLGPKFRFLAKKSDFCHTTPILVDDPFLALGMTVNFPPWKRFFDFPFRSYSCFRKKIRLTAQKVFPPPTVGVPSASKSPSALSAQA*
ACM56_101260	ACM56_1012603	F006794	MTSKAKTLLKVGLPLVIVIQLISITFLLAKMSRDKAFSCKAVGNYFVCRQIKLK*
ACM56_101769	ACM56_1017694	F012583	MSLSDQVKIKTFDKYIMRGGDQSLQNIEDLCDFGFNMCQLGYDPETFNDVVIDVICKLIEKLEANS*
ACM56_102567	ACM56_1025672	F047727	MINPFSIILSISSLFIFLRILQKKVEPDELMRPDNPYKNVRDSDEEYGEKTDYK*
ACM56_103907	ACM56_1039072	F001504	MTQDTEHFYAVQSFLEDDELCKIWNIIEIAMNREGYDVSNSELSLRLYDSELTENIEHDMEHLL*
ACM56_103962	ACM56_1039623	F089049	DYGKEKTVRVNDMGDKLLTLITDLGWEYQRMSRSGKEVFDEIHQLLGTITEDEVYMEI*
ACM56_104208	ACM56_1042081	F020922	MTLGVFHQVYTRPKATEEAIKSFRQFHPDTPYVLICDGGKSFHRIAKRYDCLYVHEEDNLGYRDHTHASGIYGMTKEEVLEWLRRFRLACTLCNTDHILMMEDDILIRGEIHVPEEWEFAGQAKPGNLLQEEFMTYLTEKYGVEWNVNYYGTGG
ACM56_104785	ACM56_1047853	F005118	NETSRAKRLIKLLERLLKKRELYDEDKLKLIKEQLKTAKNELAIIEAKTSKGFK*
ACM56_105666	ACM56_1056661	F023367	MTKKGSRKFVFTEKFISYADVEIYAENEEHARLQFQNGNYQYYDVSDFTDGHEL
ACM56_106188	ACM56_1061882	F061921	GELLLDDCNVYDFDFPLTAEEYEDAVNDQIARAEAYYENQIADYYSC*
ACM56_107988	ACM56_1079881	F059072	MNQLDQTIEDLEFCVETLGMNDEEVEEFLNFTSEFGVRPEYFSNEFIFLTGRGLEEDGKLHDPDYLN
ACM56_108281	ACM56_1082811	F003869	MARRQYNRTHYYSIGGMLTDEEVHQVWEIVGNALDRNRVYDETLKKNIVNVIDKSLEVN*
ACM56_108281	ACM56_1082812	F001479	MSKEMLFLCDVLTAWCKQNKLPHRCASDFLYGDDACKLTPNQAYWLESFIATWDVIAEHT
ACM56_108625	ACM56_1086251	F093972	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWNEISKPTKKF
ACM56_108684	ACM56_1086841	F016980	MKYRELLEQLEELTQDQLELETLVFIRDKEKFVRLDNSLYFVTEFDEYDQELETDYPYFRL*
ACM56_109179	ACM56_1091791	F103391	TQGQADISSYFDTNAALFDTRQLPGGDPAFFLQASLASYDKNIYATQPSIAGTDPVVQHQIKMQEYKKNTSDAYRNLMELLNARNVQ*

Scaffold ID

Protein ID

Family

Sequence

ACM56_100076

ACM56_1000762

F000802

MTIDEYKDLILEDEINIGYDVEDDDLPDQYDDESYIDGLLTTGFHAVDASEMFGEEVVGYSLY*

ACM56_100536

ACM56_1005362

F025306

MKLNRKESEAELETIERAMDDYMCYHDPNTPSDLIGGLPVDERVNDIMIKITEAYANL*

ACM56_100630

ACM56_1006301

F075646

MTFPPLIIWAKALFFFEQLFPVVARTWLESKSECLFLGPKFRFLAKKSDFCHTTPILVDDPFLALGMTVNFPPWKRFFDFPFRSYSCFRKKIRLTAQKVFPPPTVGVPSASKSPSALSAQA*

ACM56_101260

ACM56_1012603

F006794

MTSKAKTLLKVGLPLVIVIQLISITFLLAKMSRDKAFSCKAVGNYFVCRQIKLK*

ACM56_101769

ACM56_1017694

F012583

MSLSDQVKIKTFDKYIMRGGDQSLQNIEDLCDFGFNMCQLGYDPETFNDVVIDVICKLIEKLEANS*

ACM56_102567

ACM56_1025672

F047727

MINPFSIILSISSLFIFLRILQKKVEPDELMRPDNPYKNVRDSDEEYGEKTDYK*

ACM56_103907

ACM56_1039072

F001504

MTQDTEHFYAVQSFLEDDELCKIWNIIEIAMNREGYDVSNSELSLRLYDSELTENIEHDMEHLL*

ACM56_103962

ACM56_1039623

F089049

DYGKEKTVRVNDMGDKLLTLITDLGWEYQRMSRSGKEVFDEIHQLLGTITEDEVYMEI*

ACM56_104208

ACM56_1042081

F020922

MTLGVFHQVYTRPKATEEAIKSFRQFHPDTPYVLICDGGKSFHRIAKRYDCLYVHEEDNLGYRDHTHASGIYGMTKEEVLEWLRRFRLACTLCNTDHILMMEDDILIRGEIHVPEEWEFAGQAKPGNLLQEEFMTYLTEKYGVEWNVNYYGTGG

ACM56_104785

ACM56_1047853

F005118

NETSRAKRLIKLLERLLKKRELYDEDKLKLIKEQLKTAKNELAIIEAKTSKGFK*

ACM56_105666

ACM56_1056661

F023367

MTKKGSRKFVFTEKFISYADVEIYAENEEHARLQFQNGNYQYYDVSDFTDGHEL

ACM56_106188

ACM56_1061882

F061921

GELLLDDCNVYDFDFPLTAEEYEDAVNDQIARAEAYYENQIADYYSC*

ACM56_107988

ACM56_1079881

F059072

MNQLDQTIEDLEFCVETLGMNDEEVEEFLNFTSEFGVRPEYFSNEFIFLTGRGLEEDGKLHDPDYLN

ACM56_108281

ACM56_1082811

F003869

MARRQYNRTHYYSIGGMLTDEEVHQVWEIVGNALDRNRVYDETLKKNIVNVIDKSLEVN*

ACM56_108281

ACM56_1082812

F001479

MSKEMLFLCDVLTAWCKQNKLPHRCASDFLYGDDACKLTPNQAYWLESFIATWDVIAEHT

ACM56_108625

ACM56_1086251

F093972

MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWNEISKPTKKF

ACM56_108684

ACM56_1086841

F016980

MKYRELLEQLEELTQDQLELETLVFIRDKEKFVRLDNSLYFVTEFDEYDQELETDYPYFRL*

ACM56_109179

ACM56_1091791

F103391

TQGQADISSYFDTNAALFDTRQLPGGDPAFFLQASLASYDKNIYATQPSIAGTDPVVQHQIKMQEYKKNTSDAYRNLMELLNARNVQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001817: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM56, ROCA_DNA136_2.0um_27k

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences