Metagenome / Metatranscriptome Family F093972

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093972
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	67 residues
Representative Sequence	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWNEISKPTKKF
Number of Associated Samples	95
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.67 %
% of genes near scaffold ends (potentially truncated)	97.17 %
% of genes from short scaffolds (< 2000 bps)	85.85 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.604 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (20.755 % of family members)
Environment Ontology (ENVO)	Unclassified (65.094 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (83.962 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.24% β-sheet: 29.41% Coil/Unstructured: 57.35%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00303	Thymidylat_synt	39.62
PF00383	dCMP_cyt_deam_1	16.98
PF05050	Methyltransf_21	7.55
PF01370	Epimerase	4.72
PF07659	DUF1599	0.94
PF07883	Cupin_2	0.94
PF00583	Acetyltransf_1	0.94
PF11440	AGT	0.94
PF03167	UDG	0.94
PF01503	PRA-PH	0.94
PF01467	CTP_transf_like	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0207	Thymidylate synthase	Nucleotide transport and metabolism [F]	39.62
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.94
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.94
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.09 %
Unclassified	root	N/A	34.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.60 %
Unclassified	root	N/A	34.91 %
Viruses	superkingdom	All Organisms → Viruses	8.49 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.60 %
Unclassified	root	N/A	34.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.66 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.75 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	6.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.66 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.81 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	6.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.66 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	2.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	19.81 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.66 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.83 %
Legionellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	19.81 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.66 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1.89 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.94 %
unclassified Legionellales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Candidatus Endolissoclinum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum	19.81 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.66 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1.89 %
Legionellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	0.94 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
unclassified Candidatus Endolissoclinum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum	19.81 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.66 %
Muldoonvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Muldoonvirus	1.89 %
Legionellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	0.94 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Candidatus Endolissoclinum sp. TMED37	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	19.81 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.66 %
Serratia virus PS2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Muldoonvirus → Serratia virus PS2	1.89 %
Legionellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	0.94 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Candidatus Endolissoclinum sp. TMED37	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	19.81 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.66 %
Serratia phage PS2	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Muldoonvirus → Serratia virus PS2 → Serratia phage PS2	1.89 %
Legionellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	0.94 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000179\|LPjun09P16500mDRAFT_c1010350	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1672	Open in IMG/M
3300000259\|LP_J_08_P26_500DRAFT_1011416	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1388	Open in IMG/M
3300000323\|LPaug09P202000mDRAFT_1042373	Not Available	621	Open in IMG/M
3300001460\|JGI24003J15210_10021747	Not Available	2431	Open in IMG/M
3300001817\|ACM56_108625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	506	Open in IMG/M
3300001963\|GOS2229_1055380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	1349	Open in IMG/M
3300003539\|FS891DNA_10591447	Not Available	505	Open in IMG/M
3300005654\|Ga0079204_10376439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	551	Open in IMG/M
3300005837\|Ga0078893_12226198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	573	Open in IMG/M
3300006334\|Ga0099675_1640362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	605	Open in IMG/M
3300006345\|Ga0099693_1049606	All Organisms → Viruses → Predicted Viral	1300	Open in IMG/M
3300006735\|Ga0098038_1036434	All Organisms → Viruses → Predicted Viral	1818	Open in IMG/M
3300006753\|Ga0098039_1026186	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2081	Open in IMG/M
3300006810\|Ga0070754_10253981	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300006902\|Ga0066372_10192371	Not Available	1113	Open in IMG/M
3300007113\|Ga0101666_1046244	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300007137\|Ga0101673_1075498	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300007772\|Ga0105672_1209093	Not Available	1427	Open in IMG/M
3300008964\|Ga0102889_1224752	Not Available	544	Open in IMG/M
3300009077\|Ga0115552_1447271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	508	Open in IMG/M
3300009142\|Ga0102885_1153184	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300009550\|Ga0115013_10588602	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300010299\|Ga0129342_1027876	Not Available	2285	Open in IMG/M
3300012919\|Ga0160422_10539679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	736	Open in IMG/M
3300012952\|Ga0163180_11596537	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300012953\|Ga0163179_10048429	Not Available	2919	Open in IMG/M
3300017724\|Ga0181388_1013385	Not Available	2101	Open in IMG/M
3300017725\|Ga0181398_1073795	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300017733\|Ga0181426_1034418	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300017735\|Ga0181431_1054008	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300017738\|Ga0181428_1092792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	705	Open in IMG/M
3300017743\|Ga0181402_1052424	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300017768\|Ga0187220_1115566	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300017775\|Ga0181432_1168484	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300017775\|Ga0181432_1282970	Not Available	525	Open in IMG/M
3300017950\|Ga0181607_10345267	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300017951\|Ga0181577_10800291	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300017968\|Ga0181587_10441434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	853	Open in IMG/M
3300018417\|Ga0181558_10691572	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300018421\|Ga0181592_10205394	Not Available	1470	Open in IMG/M
3300018421\|Ga0181592_10658619	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300018424\|Ga0181591_10110817	All Organisms → cellular organisms → Bacteria	2234	Open in IMG/M
3300018424\|Ga0181591_10237073	All Organisms → Viruses → Predicted Viral	1418	Open in IMG/M
3300018876\|Ga0181564_10401571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	746	Open in IMG/M
3300019266\|Ga0182061_1069105	Not Available	780	Open in IMG/M
3300019280\|Ga0182068_1370001	Not Available	590	Open in IMG/M
3300020177\|Ga0181596_10326096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	608	Open in IMG/M
3300020278\|Ga0211606_1042358	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300020281\|Ga0211483_10295301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	538	Open in IMG/M
3300020325\|Ga0211507_1106019	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300020377\|Ga0211647_10068920	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300020378\|Ga0211527_10028457	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1864	Open in IMG/M
3300020380\|Ga0211498_10143764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	901	Open in IMG/M
3300020386\|Ga0211582_10332514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	567	Open in IMG/M
3300020388\|Ga0211678_10086643	Not Available	1403	Open in IMG/M
3300020389\|Ga0211680_10027998	All Organisms → Viruses → Predicted Viral	2799	Open in IMG/M
3300020389\|Ga0211680_10125521	Not Available	1041	Open in IMG/M
3300020410\|Ga0211699_10407970	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300020420\|Ga0211580_10004934	Not Available	6321	Open in IMG/M
3300020422\|Ga0211702_10021566	All Organisms → cellular organisms → Bacteria	1745	Open in IMG/M
3300020424\|Ga0211620_10277944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	714	Open in IMG/M
3300020430\|Ga0211622_10014585	All Organisms → Viruses → Predicted Viral	4003	Open in IMG/M
3300020433\|Ga0211565_10044469	Not Available	1889	Open in IMG/M
3300020433\|Ga0211565_10107619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	1203	Open in IMG/M
3300020437\|Ga0211539_10435299	Not Available	546	Open in IMG/M
3300020463\|Ga0211676_10302219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	912	Open in IMG/M
3300020470\|Ga0211543_10372269	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300021065\|Ga0206686_1113402	Not Available	806	Open in IMG/M
3300021089\|Ga0206679_10639319	Not Available	540	Open in IMG/M
3300021442\|Ga0206685_10069456	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Muldoonvirus → Serratia virus PS2 → Serratia phage PS2	1149	Open in IMG/M
3300021442\|Ga0206685_10268220	Not Available	578	Open in IMG/M
3300021443\|Ga0206681_10086601	Not Available	1221	Open in IMG/M
3300021443\|Ga0206681_10163228	Not Available	872	Open in IMG/M
3300021443\|Ga0206681_10212157	Not Available	755	Open in IMG/M
3300021960\|Ga0222715_10536078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	615	Open in IMG/M
3300022074\|Ga0224906_1015524	Not Available	2832	Open in IMG/M
3300022929\|Ga0255752_10209708	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300023110\|Ga0255743_10366128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	722	Open in IMG/M
3300023119\|Ga0255762_10085824	Not Available	1910	Open in IMG/M
3300024343\|Ga0244777_10421456	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300025102\|Ga0208666_1148550	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300025133\|Ga0208299_1194746	Not Available	605	Open in IMG/M
3300025897\|Ga0209425_10535231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	531	Open in IMG/M
3300026190\|Ga0207987_1064346	Not Available	503	Open in IMG/M
3300027572\|Ga0208964_1004167	All Organisms → cellular organisms → Bacteria	5034	Open in IMG/M
3300028127\|Ga0233401_1117473	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300028192\|Ga0257107_1050357	Not Available	1286	Open in IMG/M
3300028535\|Ga0257111_1007879	Not Available	3907	Open in IMG/M
3300028535\|Ga0257111_1027630	All Organisms → cellular organisms → Bacteria	1946	Open in IMG/M
3300029448\|Ga0183755_1055442	Not Available	970	Open in IMG/M
3300029792\|Ga0183826_1017726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	1156	Open in IMG/M
3300031608\|Ga0307999_1092675	Not Available	700	Open in IMG/M
3300031757\|Ga0315328_10444950	Not Available	749	Open in IMG/M
3300031766\|Ga0315322_10107461	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2009	Open in IMG/M
3300031766\|Ga0315322_10716539	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300031773\|Ga0315332_10079599	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2100	Open in IMG/M
3300031775\|Ga0315326_10200141	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1313	Open in IMG/M
3300031775\|Ga0315326_10570473	Not Available	722	Open in IMG/M
3300031785\|Ga0310343_10348598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	1060	Open in IMG/M
3300031861\|Ga0315319_10163312	All Organisms → Viruses → Predicted Viral	1114	Open in IMG/M
3300031886\|Ga0315318_10134656	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1388	Open in IMG/M
3300032088\|Ga0315321_10204089	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Muldoonvirus → Serratia virus PS2 → Serratia phage PS2	1297	Open in IMG/M
3300032277\|Ga0316202_10305387	Not Available	741	Open in IMG/M
3300034375\|Ga0348336_186426	Not Available	571	Open in IMG/M
3300034695\|Ga0372840_094086	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	34.91%
Unclassified	Environmental → Aquatic → Marine → Unclassified	23.58%
Oceanic	Environmental → Aquatic → Marine → Oceanic	20.75%
Strait	Environmental → Aquatic → Marine → Strait	9.43%
Coastal	Environmental → Aquatic → Marine → Coastal	5.66%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	1.89%
Volcanic	Environmental → Aquatic → Marine → Volcanic	1.89%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.94%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	23.58%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	16.98%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	15.09%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	15.09%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	9.43%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	4.72%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	2.83%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	2.83%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.83%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	1.89%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	1.89%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.94%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	20.75%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	15.09%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	15.09%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	9.43%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	7.55%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	2.83%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	2.83%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.83%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.89%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.89%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	1.89%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.89%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.89%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.89%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	0.94%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.94%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.94%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.94%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.94%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.94%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.94%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	0.94%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.94%
Diffuse Hydrothermal Flow Volcanic Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent	0.94%
Diffuse Vent Fluid, Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents	0.94%
Volcanic Co2 Seeps	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps	0.94%
Volcanic Co2 Seep Seawater	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000179	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 500m	Environmental	Open in IMG/M
3300000259	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_J_08_P26_500	Environmental	Open in IMG/M
3300000323	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P20 2000m	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001817	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM56, ROCA_DNA136_2.0um_27k	Environmental	Open in IMG/M
3300001963	Marine microbial communities from Nags Head, North Carolina, USA - GS013	Environmental	Open in IMG/M
3300003539	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS891_Anemone_DNA	Environmental	Open in IMG/M
3300005654	Porphyra Blade Metagenome Co-Assembly	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006334	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m	Environmental	Open in IMG/M
3300006345	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006902	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A	Environmental	Open in IMG/M
3300007113	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-is	Environmental	Open in IMG/M
3300007137	Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'control', water-dc	Environmental	Open in IMG/M
3300007772	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS914_Anemone_DNA CLC_assembly	Environmental	Open in IMG/M
3300008964	Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02	Environmental	Open in IMG/M
3300009077	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328	Environmental	Open in IMG/M
3300009142	Estuarine microbial communities from the Columbia River estuary - metaG 1550B-3	Environmental	Open in IMG/M
3300009550	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome	Environmental	Open in IMG/M
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012952	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300017724	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17	Environmental	Open in IMG/M
3300017725	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29	Environmental	Open in IMG/M
3300017733	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23	Environmental	Open in IMG/M
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental	Open in IMG/M
3300017738	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12	Environmental	Open in IMG/M
3300017743	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17	Environmental	Open in IMG/M
3300017768	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300017950	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018417	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018876	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019266	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101407AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019280	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071401AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020177	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041402US metaG (spades assembly)	Environmental	Open in IMG/M
3300020278	Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556076-ERR599151)	Environmental	Open in IMG/M
3300020281	Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)	Environmental	Open in IMG/M
3300020325	Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX556073-ERR598966)	Environmental	Open in IMG/M
3300020377	Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)	Environmental	Open in IMG/M
3300020378	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)	Environmental	Open in IMG/M
3300020380	Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)	Environmental	Open in IMG/M
3300020386	Marine microbial communities from Tara Oceans - TARA_B100000609 (ERX555990-ERR599038)	Environmental	Open in IMG/M
3300020388	Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)	Environmental	Open in IMG/M
3300020389	Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)	Environmental	Open in IMG/M
3300020410	Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)	Environmental	Open in IMG/M
3300020420	Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)	Environmental	Open in IMG/M
3300020422	Marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 (ERX555999-ERR599126)	Environmental	Open in IMG/M
3300020424	Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)	Environmental	Open in IMG/M
3300020430	Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)	Environmental	Open in IMG/M
3300020433	Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)	Environmental	Open in IMG/M
3300020437	Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)	Environmental	Open in IMG/M
3300020463	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)	Environmental	Open in IMG/M
3300020470	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)	Environmental	Open in IMG/M
3300021065	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015	Environmental	Open in IMG/M
3300021089	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015	Environmental	Open in IMG/M
3300021442	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015	Environmental	Open in IMG/M
3300021443	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300022074	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)	Environmental	Open in IMG/M
3300022929	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG	Environmental	Open in IMG/M
3300023110	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG	Environmental	Open in IMG/M
3300023119	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG	Environmental	Open in IMG/M
3300024343	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction	Environmental	Open in IMG/M
3300025102	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025133	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)	Environmental	Open in IMG/M
3300025897	Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)	Environmental	Open in IMG/M
3300026190	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF86A (SPAdes)	Environmental	Open in IMG/M
3300027572	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20 (SPAdes)	Environmental	Open in IMG/M
3300028127	Seawater microbial communities from Monterey Bay, California, United States - 49D	Environmental	Open in IMG/M
3300028192	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m	Environmental	Open in IMG/M
3300028535	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500m	Environmental	Open in IMG/M
3300029448	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082	Environmental	Open in IMG/M
3300029792	Marine giant viral communities collected during Tara Oceans survey from station TARA_041 - TARA_Y100000052	Environmental	Open in IMG/M
3300031608	Marine microbial communities from water near the shore, Antarctic Ocean - #1	Environmental	Open in IMG/M
3300031757	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315	Environmental	Open in IMG/M
3300031766	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515	Environmental	Open in IMG/M
3300031773	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915	Environmental	Open in IMG/M
3300031775	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315	Environmental	Open in IMG/M
3300031785	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG	Environmental	Open in IMG/M
3300031861	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416	Environmental	Open in IMG/M
3300031886	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416	Environmental	Open in IMG/M
3300032088	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515	Environmental	Open in IMG/M
3300032277	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite	Environmental	Open in IMG/M
3300034375	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)	Environmental	Open in IMG/M
3300034695	Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500m	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LPjun09P16500mDRAFT_10103504	3300000179	Marine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRESMNFPVTYFRGADWDMVSKPAKKFPNLIASN
LP_J_08_P26_500DRAFT_10114164	3300000259	Marine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRESMNFPVTYFRGADWDMVSKPAKKFPNLIASNDVVHRINQ
LPaug09P202000mDRAFT_10423732	3300000323	Marine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVSYFRGADWDMVSKPTKKFPNL
JGI24003J15210_100217477	3300001460	Marine	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMNSMDFKVNYFRGTDWDE
ACM56_1086251	3300001817	Marine Plankton	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWNEISKPTKKF
GOS2229_10553802	3300001963	Marine	MKIGILLGRGVEGVGLTKNVVEFQNLYPEVEVFATIDKLWQRMDSMKFNVNYFRGADWNEVSKPAK
FS891DNA_105914472	3300003539	Diffuse Hydrothermal Flow Volcanic Vent	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRESMNFPVTYFRGADWDMVSKPAKKFPNLI
Ga0079204_103764391	3300005654	Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVKVFATIDKLWPRMNSMPFEKSFFRGADWDTISKPAKKFP
Ga0078893_122261981	3300005837	Marine Surface Water	MKVGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWDQISKPTKKFPDLLTCTQVIE
Ga0099675_16403621	3300006334	Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWNEISKPTKKFPDLLT
Ga0099693_10496061	3300006345	Marine	MKIGVILGRGVEGVGLTKNVVELQRLYPHVEVYATIDKLWQRMNSMDLKVN
Ga0098038_10364345	3300006735	Marine	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMNSMDFKVNYFRGTDWDEVSKPSKKFPDLLTCSK
Ga0098039_10261865	3300006753	Marine	MKIGVILGRGVEGVGVTKNVVEFQKLWGGVEIFATMDKLWPRRESMDFPVTYFRGADWDMVSKPAKKFPNLIAC
Ga0070754_102539813	3300006810	Aqueous	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGT
Ga0066372_101923711	3300006902	Marine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRESMKFPVSYFRGADWAAVSKPAKKFPR
Ga0101666_10462441	3300007113	Volcanic Co2 Seep Seawater	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFK
Ga0101673_10754981	3300007137	Volcanic Co2 Seeps	MKIGVILGRGVEGVGLTKNVVEFQKLFHGVEVYATIDKLWQRMNSMDFKVNYFRGTDWNE
Ga0105672_12090931	3300007772	Diffuse Vent Fluid, Hydrothermal Vents	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRDSMNFKVNHF
Ga0102889_12247521	3300008964	Estuarine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADGDMVSKPTKKLPHLIA
Ga0115552_14472712	3300009077	Pelagic Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVKVFATIDKLWPRMNSMPFEKSFFRGADWDTLSKPAKKFPDLMTCTEVIDQINELDM
Ga0102885_11531842	3300009142	Estuarine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFASMDKLWPRRESMNFPVT
Ga0115013_105886023	3300009550	Marine	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMNSMDFKVNYFRGTDWDEVSKPSKKFPDLLTCSKVVER
Ga0129342_10278761	3300010299	Freshwater To Marine Saline Gradient	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWD
Ga0160422_105396792	3300012919	Seawater	MKIGVILGRGVEGVGLTKNVVELQRLYPHVEVYATIDKLWQRMNSMDLKVNY
Ga0163180_115965372	3300012952	Seawater	MKVGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWNEVSKPSKKF
Ga0163179_100484291	3300012953	Seawater	MKIGVILGRGVEGVGLTKNVVEFQKLYPDVEVYATIDKLWQRMNSMDFKVNYFRGTDWNEISKTSKKFPDLLTCTQVIER
Ga0181388_10133851	3300017724	Seawater	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVKVFATIDKLWPRMNSMPFEKS
Ga0181398_10737953	3300017725	Seawater	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMNSMDFKVNYFRGTDWDEVSKPSKKFPDLLTCSKVIERI
Ga0181426_10344181	3300017733	Seawater	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMNSMDFKVNYFRGTDWDEVSKPSKKFPDLLTCSKV
Ga0181431_10540083	3300017735	Seawater	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMNSMDFPFSFL
Ga0181428_10927921	3300017738	Seawater	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMNSMDFKVNYFRGTDWDEVSKPSKKFPDLLTCSKVVEILL
Ga0181402_10524243	3300017743	Seawater	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMNSMDFKVNYFRGTD
Ga0187220_11155663	3300017768	Seawater	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMNSMDFKVNYFRGT
Ga0181432_11684841	3300017775	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRESMDFPVTYFR
Ga0181432_12829702	3300017775	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPTKKFPNLIACNDVVHRIN
Ga0181607_103452671	3300017950	Salt Marsh	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWDEVSKPSKKFPDLLTCSKVVERINQ
Ga0181577_108002911	3300017951	Salt Marsh	MKIGVLLGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDW
Ga0181590_102686343	3300017967	Salt Marsh	MKIGILLGRGVEGVGLTKNVVEFQNLYPDVEVFATIDKLWQRMDSMKFN
Ga0181587_104414341	3300017968	Salt Marsh	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWPRMNSMNFKVNYFRGSDWDTISKPAKKFPNLLTCTQVIDRINELDA
Ga0181558_106915722	3300018417	Salt Marsh	MKIGVLLGRGVEGVGLTKNVVEFQRLFPGVEVYATIDKLWQRMNSMDFKVNYFRGADWDQISKPTKKFP
Ga0181592_102053941	3300018421	Salt Marsh	MKIGILLGRGVEGVGLTKNVVEFQNLYPEVEVFATIDKLWQRMDSMKFRVNYFRGADWDT
Ga0181592_106586193	3300018421	Salt Marsh	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWDEVSKPSKKFPDLLTCS
Ga0181591_101108171	3300018424	Salt Marsh	MKIGILLGRGVEGVGLTKNVVEFQNLYPDVEVFATIDKLWQRMDSMKFNVNYFRGADWDEVSK
Ga0181591_102370733	3300018424	Salt Marsh	MKIGILLGRGVEGVGLTKNVVEFQNLYPDVEVFATIDKLWQRMDSMKFNVNYF
Ga0181564_104015711	3300018876	Salt Marsh	MKIGVLLGRGVEGVGLTKNVVEFQRLFPGVEVYATIDKLWQRMNSMDFKVNYFRGADWDQISKPTKKFPDLLTCTQVIERINQLDMCIVWS
Ga0182061_10691053	3300019266	Salt Marsh	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWPRMNSMNFKVNYFRGS
Ga0182068_13700011	3300019280	Salt Marsh	MKIGILLGRGVEGVGLTKNVVEFQNLYPEVEVFATIDKLWQRMDSMKFRVN
Ga0181596_103260961	3300020177	Salt Marsh	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWDEVSKPSKKFPDLLTCSKVVERI
Ga0211606_10423581	3300020278	Marine	MKIGVLLGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWDQ
Ga0211483_102953011	3300020281	Marine	MKIGVLLGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWDQISKPTKKFPDLLTCTQVI
Ga0211507_11060192	3300020325	Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTD
Ga0211647_100689201	3300020377	Marine	MKIGVLLGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWDQISKPTKK
Ga0211527_100284575	3300020378	Marine	MKIGVILGRGVEGVGLTKNVVELQRLYPHVEVYATIDKLWQRMNSMDLKVNYFRGTDWDTISKPAKKFPDLLTCTQ
Ga0211498_101437642	3300020380	Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMNFKVNYF
Ga0211582_103325142	3300020386	Marine	MKIGVILGRGVEGVGLTKNVVELQRLYPHVEVYATIDKLWQRMNSMDLKVNYFRGADWDT
Ga0211678_100866431	3300020388	Marine	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMNSMDFKVNYFRGTDWDEVSK
Ga0211680_100279981	3300020389	Marine	MEMKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRESMNFPVTYFRGADWDMV
Ga0211680_101255211	3300020389	Marine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDM
Ga0211699_104079702	3300020410	Marine	MKIGVLLGRGVEGVGLTKNVVEFQKLYPEVEIYATIDKLWQRMNSMDFKVNYFRGADWNEISKPTKKFP
Ga0211580_100049341	3300020420	Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWNEISKPTKKFPDLLTCS
Ga0211702_100215661	3300020422	Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPDVEVYATIDKLWQRMNSMDFKVNYFRGTDWNEISKPT
Ga0211620_102779442	3300020424	Marine	MKIGVILGRGVEGVGLTKNVVELQRLYPHVEVYATIDKLWQRMNSMDLKVNYFRGTDWDTISKPTKKFP
Ga0211622_1001458510	3300020430	Marine	MKIGVILGRGVEGVGLTKNVVELQRLYPHVEVYATIDKLWQRMNSMDLKVNYFRGADWDTISKSTKKFPDLLTCTQ
Ga0211565_100444695	3300020433	Marine	MKIGVLLGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMEFKVNYFRGTD
Ga0211565_101076193	3300020433	Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMNFKVNYFRGTDWNEISKPTKKFPDLLTCSQVVERINQLDMC
Ga0211539_104352991	3300020437	Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEIFATIDKLWPRMNSMKFKVNYFRGADWNTISKVSK
Ga0211676_103022192	3300020463	Marine	MKIGVILGRGVEGVGLTKNVVELQRLYPNVEVFATIDKLWQRMNSMDLKVNYFRGTDWDTISKPAKKFPDLMTCTQVIDRLN
Ga0211543_103722693	3300020470	Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPDVEVYATIDKLWQRMNSMDFKVNYFRGTDWNE
Ga0206686_11134021	3300021065	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVSYFRGADWDMVSKSTK
Ga0206679_106393191	3300021089	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPAKKFPNLIACNDVVHRINQL
Ga0206685_100694563	3300021442	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVT
Ga0206685_102682201	3300021442	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFKGADWDMVSKPTKKF
Ga0206681_100866011	3300021443	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFKGADWDMVSKPAKKFPNLIACNDVVHRINQLD
Ga0206681_101632281	3300021443	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVSYFRGADWDMVSKSTKKF
Ga0206681_102121571	3300021443	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPTKKFPN
Ga0222715_105360782	3300021960	Estuarine Water	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMYSMDFKVNYFRGTDWNEISKPSKKFPDLLTCSKVVERINQLDMCIVWSV
Ga0224906_10155249	3300022074	Seawater	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMNSMDFKVNY
Ga0255752_102097083	3300022929	Salt Marsh	MKIGVLLGRGVEGVGLTKNVVEFQRLFPGVEVYATIDKLWQRMNSMDFKVNYFRGADWDQISKPTKKFPDLLTCTQV
Ga0255743_103661282	3300023110	Salt Marsh	MKIGILLGRGVEGVGLTKNVVEFQNLYPDVEVFATIDKLWQRMDSMKFNVNYFRGADWNEVSKPAKRFPDLMSCT
Ga0255762_100858241	3300023119	Salt Marsh	MKIGVLLGRGVEGVGLTKNVVEFQRLFPGVEVYATIDKLWQRMNSMDFKVNYFRGADWDQISKPTKKFPDLLTCTQVIERINQL
Ga0244777_104214562	3300024343	Estuarine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPAKKFPDLIACNDVVH
Ga0208666_11485501	3300025102	Marine	MKIGVVLGRGVEGVGLTKNVVELQRLYPHVEVYATIDKLWGRMNSMDLKVNYFRGADWDSISKPTKKF
Ga0208299_11947461	3300025133	Marine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPAKKFP
Ga0209425_105352312	3300025897	Pelagic Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVKVFATIDKLWPRMNSMPFEKSFFR
Ga0207987_10643462	3300026190	Marine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRESMNFPVTYFRGADWD
Ga0208964_100416710	3300027572	Marine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPAKKFPNLIACNDVVHRI
Ga0233401_11174732	3300028127	Seawater	MKVGVLLGRGVEGVGLTKNVVEFQKLFPGVEVFATIDKLWQRMNSMDFKVNYFRGTDWDEVS
Ga0257107_10503571	3300028192	Marine	MKIGVILGRGVEGVGVTKNVVEFQKLWPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPAKKFPNLIAC
Ga0257111_10078791	3300028535	Marine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRDSMNFPVT
Ga0257111_10276305	3300028535	Marine	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPTKKFPNLIAC
Ga0183755_10554421	3300029448	Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVKVFATIDKLWPRMNSMPFEKSFFRGADWDT
Ga0183826_10177261	3300029792	Marine	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVEVYATIDKLWQRMNSMDFKVNYFRGTDWNEIS
Ga0307999_10926752	3300031608	Marine	MKISVILGRGVEGVGLTKNVVEFQKLFPEVKIFATIDRLWPRMHSMPFEKSFFRGADWDTISK
Ga0315328_104449502	3300031757	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFR
Ga0315322_101074614	3300031766	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPAKKFPNLIACNDV
Ga0315322_107165391	3300031766	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPA
Ga0315332_100795991	3300031773	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPAKKFPNLIACNDVVHRINQLDA
Ga0315326_102001413	3300031775	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTY
Ga0315326_105704732	3300031775	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPTKKFPNLIACNDVVHRINQL
Ga0310343_103485981	3300031785	Seawater	MKIGVILGRGVEGVGLTKNVVELQRLYPHVEVYATIDKLWQRMNSMDLKVNYFRGTDWDTISKP
Ga0315319_101633123	3300031861	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFKGADWDMVSKPTKKFP
Ga0315318_101346561	3300031886	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPAKKFPDLIACND
Ga0315321_102040891	3300032088	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRESMNFPVT
Ga0316202_103053872	3300032277	Microbial Mat	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFRGADWDMVSKPAKKFPNLIA
Ga0348336_186426_2_211	3300034375	Aqueous	MKIGILLGRGVEGVGLTKNVVEFQNLYPDVEVFATIDKLWQRMDSMKFNVNYFRGADWNEVSKPAKRFPD
Ga0372840_094086_663_890	3300034695	Seawater	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATMDKLWPRRESMNFPVTYFKGADWDMVSKPTKKFPNLIACND

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093972

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences