3300001797: Marine viral communities from the Deep Pacific Ocean - MSP-81

Overview

Basic Information

• IMG/M Taxon OID: 3300001797
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0056681 | Ga0006041
• Sample Name: Marine viral communities from the Deep Pacific Ocean - MSP-81
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43840580
• Sequencing Scaffolds: 20
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
Not Available	13
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): -28.4105
  • Long. (^o): 179.1447
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008755	Metagenome / Metatranscriptome	328	Y
F010945	Metagenome / Metatranscriptome	297	Y
F014327	Metagenome / Metatranscriptome	264	Y
F021867	Metagenome	217	N
F025146	Metagenome	203	N
F030879	Metagenome / Metatranscriptome	184	Y
F034208	Metagenome	175	Y
F040146	Metagenome	162	N
F052875	Metagenome	142	N
F053337	Metagenome	141	Y
F071943	Metagenome	121	Y
F080240	Metagenome	115	Y
F080507	Metagenome / Metatranscriptome	115	N
F082793	Metagenome	113	N
F083241	Metagenome	113	N
F087293	Metagenome / Metatranscriptome	110	N
F087758	Metagenome	110	N
F091864	Metagenome	107	Y
F092722	Metagenome	107	Y
F093704	Metagenome	106	N
F097131	Metagenome	104	N
F104992	Metagenome / Metatranscriptome	100	N
F105340	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24649J20148_1003103	All Organisms → Viruses → Predicted Viral	1753
JGI24649J20148_1004280	All Organisms → Viruses → Predicted Viral	1255
JGI24649J20148_1005584	Not Available	989
JGI24649J20148_1005677	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	978
JGI24649J20148_1005951	Not Available	943
JGI24649J20148_1005967	Not Available	941
JGI24649J20148_1006625	Not Available	866
JGI24649J20148_1006854	Not Available	841
JGI24649J20148_1008620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	712
JGI24649J20148_1008934	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	695
JGI24649J20148_1009242	Not Available	679
JGI24649J20148_1009558	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	664
JGI24649J20148_1009769	Not Available	654
JGI24649J20148_1009873	Not Available	649
JGI24649J20148_1009912	Not Available	648
JGI24649J20148_1010877	Not Available	610
JGI24649J20148_1010921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	609
JGI24649J20148_1014384	Not Available	519
JGI24649J20148_1015444	Not Available	500
JGI24649J20148_1015451	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24649J20148_1003103	JGI24649J20148_10031033	F087293	YKAKAAVLEAQVTKLENDLRSKNGQRRRDTDRDAELAGIHDTLGALQRVFTLYVEDRKMDMSDEAQVQISRVGQELAQGQATRDWNARYEKEQSRLMSTVQDDSDNILISEDDAQKLQSDWQAAWAKDSKASRGDFEDVINIQIEAAKMVAQEERRRAADERKLLSDEAKNAGKKALEKAGVADLDTGAAIAGGNEELRGSALIERGLRRRNV*
JGI24649J20148_1004280	JGI24649J20148_10042804	F091864	MTKTKLGLIGPILKDNHGHECNGECKGNIHVIYKRGA*
JGI24649J20148_1005584	JGI24649J20148_10055841	F082793	MAEVIPKKDDIIHAESLALGSSAETLSSAGATIPQNCGDIVVVCPSGDSLHMAPSITPTSTLGRPVTLGHPGRIPHAHQKVMKLISDDASDVTCVLIYYRGXGRQDVAYTKSEPF*
JGI24649J20148_1005677	JGI24649J20148_10056772	F052875	MELAAVQQLVAAVGPIGAMVVIGAWWFATHQEKRGGVKDQTARLKARDAIIQISADVGHMKKDIADIKADGKTTATTLMQHMAQQHTRGR*
JGI24649J20148_1005951	JGI24649J20148_10059511	F093704	FPPGTSGKLLEIRARPAMTSVGTTPPEIVSIRVKSQLXPDPTKIYPVDLYLADNQIILSGAEGGRVKGDLSQLETWNAGASDLTLTTPDKETRQVIFLPGSMQKQESFKEHGRXPEYHVRFLLAEV*
JGI24649J20148_1005967	JGI24649J20148_10059673	F030879	VTRKKKEYTVVGNHAVFENEPGSTFSSDMSDEDAKRLIDGGHLATAKRPQEG*
JGI24649J20148_1006625	JGI24649J20148_10066251	F071943	VNKLTVMRLALKHMDSCVVAVELIEEVQRLKREDGTIARSDRGQLMSRFWALVKTV*
JGI24649J20148_1006854	JGI24649J20148_10068543	F080240	ILIAILAITALGLLVSFMGFLMEQEGIITGAGIGSIVAIANLATKILDGEG*
JGI24649J20148_1006995	JGI24649J20148_10069951	F025146	PSDEPAVRLACEQADEVTALRRAAARLSEPMQRLQYVYAGQAAEKLLMXSLSSLGFTPTARARLGLVVAQAAETESRLDRFSNRGN*
JGI24649J20148_1008620	JGI24649J20148_10086202	F053337	DWQIEIGADTGTYCAAVAVAVSPEGHALVIDEVTNYRYVANTPELDPDSSILRWCDEVRQMADRWGVRPVAWVDANSQFKVECAHHGLQLLANKRGREVRTEAARQYFQHSQIDLTPWLDMLPYELEHAQWPDRTTAAGKYERLKEHDHVLDCLEHVLSRHPRGRLIKEDRVPPMPGSVQWMGSPLRKRRRRAAVDQHLGAN*
JGI24649J20148_1008934	JGI24649J20148_10089342	F083241	MTPWAMLQYVDIVEPIGDAFTDWEAYASAWENQAAKLMPVEYQEEYKMRYWMAGAPTPGFYMQISTPTFSPDATSVPAPVSFELFTTGRRSIDVRTA*
JGI24649J20148_1009242	JGI24649J20148_10092423	F040146	INKKGQPRVTRVKMKYGGGVGVQTHGNKLAKALNTKRPDQSLFQNEDGYLTGGIPIRS*
JGI24649J20148_1009558	JGI24649J20148_10095582	F092722	AAHKGALMYFVVGDIRFPITFPANWANIGVPNNEAVSQPVQIPTQVVGYKTTK*
JGI24649J20148_1009769	JGI24649J20148_10097691	F008755	MNKSRVARDLWRKVFNDNIINLSDGDARKQVVREFLADPVNKKAGWKAKDARFMRLGFQKVAKENNFNVMNIGVTPTPSRSKTQKGSMNINVKSKXKNPTPMIDAIKPPTEEEKKFGALPQTPQLVGQQAQAVQYSAQSVGQIFETLFNIFSARTGCSXLXXXVSWTASSSSSILCSKRWSNL*
JGI24649J20148_1009873	JGI24649J20148_10098732	F010945	AAANGEVEDEVEYEAPAGDSDFEGILAAARQGEDVRHIAKMTRSIFRARGWPNDEHPETVRDWLESHNIPIIDVPIHSDPDEQRKHISGETERIRVAGWGKSWDIT*
JGI24649J20148_1009912	JGI24649J20148_10099121	F104992	MTTGTRQYISRNGTTTDQGGADTDLTITKSSDKVQLVDPGGSGNNLDLIMVDVSETGVTTAFCEIYIQNEADADEQIQVRDGNNSDNVIGVIDQNFGAWFTWDGTGWTGSSS
JGI24649J20148_1010877	JGI24649J20148_10108771	F097131	MTTRRNELHDIIDALRLEKKSYSEDADKANPIKFGEQRFSSRAAAVKHWEGLPPAKKQEHLQKYGNESIVQMLRGGSGRNA
JGI24649J20148_1010921	JGI24649J20148_10109211	F105340	TIAESITATLKPSGVFMGCNYVDADGSQKFSRYWPGEAITAATSIEFHVITDPDQTYYIQGNATCSHGEICKVLNYTATVSTASAGSTKTGQSAFFVETSAAGVETIVGNVRVIGYKKDPNEXXDGLDQYPVLEVWLPTHRDRFATTTVSTA*
JGI24649J20148_1013055	JGI24649J20148_10130551	F014327	AFNFKVSKRTKENTVNTREMREQAAALLSVAETELEKGEVDTFNRMITEAQEKMEQADIFDQAASKVAVLKGDFNRPLNTVPIADKDAAIYDPLDTTSRTKNDYKPASWVKGLPAMAQPIWVQDQMGENLHDEARFMTDTFVKWLRSPSEDSFRMSASLDELKAMQEDTDAEGGFFVPEQFI
JGI24649J20148_1014384	JGI24649J20148_10143841	F021867	NTAHFSSLAVAELKGYINKEDNIMDNNVEQVDWDKVNRGKVRYGFALELYKKGGELTPSGMGRIEAFVDFVMGDMEDEPAEEKQQSKLMSRLECKQVIETESEGSKAFVKAMVHIDASGLQDDDLEKVLQALKTGKITMDNLQASLDKIYSIKQSYK*
JGI24649J20148_1014543	JGI24649J20148_10145432	F080507	LDTKELRSQAGALLDQAQVAMDQGEMDTFRRLVDEAQVTMTKADEIDAAASQVRKLRGEFNQPLNAIPVTSNDVAVYNAMDTTARTKSDYKPASFIKGLPAMAQPLWVQEQMGDNIKDEARFM
JGI24649J20148_1015444	JGI24649J20148_10154442	F087758	MAKTTKSEFTEAVMRVTEEVAQAKDKANESDPVPLMTERMSMSEGHKEFQKMSEFQRQMFLDANGQQKLLDMARGGSEFDA
JGI24649J20148_1015451	JGI24649J20148_10154511	F034208	KLTRDLGDARLFGEEFQLICGAPDGKGGGEAMYTVGEALQMAQDMNNMPPPKTEVRPKDWNKIFWENIEERNLWKRGASTFGPMHRKQRNT*