Metagenome Family F091864

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091864
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	39 residues
Representative Sequence	MTKKKVGGSGAILKDNHGHEECNGECKGAIHVIYQRRA
Number of Associated Samples	69
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.31 %
% of genes near scaffold ends (potentially truncated)	21.50 %
% of genes from short scaffolds (< 2000 bps)	85.98 %
Associated GOLD sequencing projects	57
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.402 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean (41.121 % of family members)
Environment Ontology (ENVO)	Unclassified (91.589 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (86.916 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 9.09% Coil/Unstructured: 90.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF10686	YAcAr	0.93
PF09250	Prim-Pol	0.93
PF04545	Sigma70_r4	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
All Organisms	root	All Organisms	48.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Viruses	superkingdom	All Organisms → Viruses	40.19 %
cellular organisms	root	All Organisms → cellular organisms	8.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	6.54 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	6.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
Candidatus Pacearchaeota	clade	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota	6.54 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	6.54 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	6.54 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	6.54 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001724\|JGI24662J20072_1017327	Not Available	621	Open in IMG/M
3300001726\|JGI24653J20064_1007379	Not Available	974	Open in IMG/M
3300001730\|JGI24660J20065_1026589	Not Available	526	Open in IMG/M
3300001736\|JGI24659J20068_1010568	Not Available	854	Open in IMG/M
3300001797\|JGI24649J20148_1004280	All Organisms → Viruses → Predicted Viral	1255	Open in IMG/M
3300002231\|KVRMV2_102001145	Not Available	514	Open in IMG/M
3300006076\|Ga0081592_1129962	Not Available	938	Open in IMG/M
3300006736\|Ga0098033_1114629	Not Available	763	Open in IMG/M
3300006736\|Ga0098033_1178617	Not Available	590	Open in IMG/M
3300006738\|Ga0098035_1049150	All Organisms → Viruses → Predicted Viral	1547	Open in IMG/M
3300006738\|Ga0098035_1096376	All Organisms → Viruses → Predicted Viral	1033	Open in IMG/M
3300006750\|Ga0098058_1111273	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	736	Open in IMG/M
3300006751\|Ga0098040_1030660	All Organisms → Viruses → Predicted Viral	1717	Open in IMG/M
3300006751\|Ga0098040_1164057	Not Available	655	Open in IMG/M
3300006752\|Ga0098048_1202726	Not Available	585	Open in IMG/M
3300006753\|Ga0098039_1011008	All Organisms → Viruses → Predicted Viral	3313	Open in IMG/M
3300006753\|Ga0098039_1127802	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	871	Open in IMG/M
3300006753\|Ga0098039_1129802	Not Available	864	Open in IMG/M
3300006754\|Ga0098044_1059428	All Organisms → Viruses → Predicted Viral	1612	Open in IMG/M
3300006754\|Ga0098044_1171223	Not Available	863	Open in IMG/M
3300006789\|Ga0098054_1006078	Not Available	5232	Open in IMG/M
3300006924\|Ga0098051_1192962	Not Available	533	Open in IMG/M
3300006929\|Ga0098036_1201658	Not Available	604	Open in IMG/M
3300006929\|Ga0098036_1242967	Not Available	544	Open in IMG/M
3300008050\|Ga0098052_1373094	Not Available	532	Open in IMG/M
3300008216\|Ga0114898_1021120	All Organisms → Viruses → Predicted Viral	2267	Open in IMG/M
3300008216\|Ga0114898_1037969	All Organisms → Viruses → Predicted Viral	1581	Open in IMG/M
3300008216\|Ga0114898_1178149	Not Available	601	Open in IMG/M
3300008217\|Ga0114899_1036645	All Organisms → Viruses → Predicted Viral	1805	Open in IMG/M
3300008217\|Ga0114899_1039593	All Organisms → Viruses → Predicted Viral	1723	Open in IMG/M
3300008217\|Ga0114899_1135019	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	811	Open in IMG/M
3300008217\|Ga0114899_1224189	Not Available	588	Open in IMG/M
3300008218\|Ga0114904_1048267	All Organisms → Viruses → Predicted Viral	1120	Open in IMG/M
3300008218\|Ga0114904_1060644	Not Available	969	Open in IMG/M
3300008218\|Ga0114904_1086106	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	777	Open in IMG/M
3300008219\|Ga0114905_1209983	Not Available	625	Open in IMG/M
3300008219\|Ga0114905_1221684	Not Available	603	Open in IMG/M
3300008220\|Ga0114910_1016994	All Organisms → Viruses → Predicted Viral	2599	Open in IMG/M
3300009412\|Ga0114903_1071267	Not Available	789	Open in IMG/M
3300009413\|Ga0114902_1114232	Not Available	710	Open in IMG/M
3300009414\|Ga0114909_1010278	All Organisms → Viruses → Predicted Viral	3362	Open in IMG/M
3300009595\|Ga0105214_119692	Not Available	544	Open in IMG/M
3300009602\|Ga0114900_1022059	All Organisms → Viruses → Predicted Viral	2276	Open in IMG/M
3300009602\|Ga0114900_1091683	Not Available	846	Open in IMG/M
3300009602\|Ga0114900_1137894	Not Available	641	Open in IMG/M
3300009603\|Ga0114911_1046523	All Organisms → Viruses → Predicted Viral	1358	Open in IMG/M
3300009603\|Ga0114911_1171444	Not Available	602	Open in IMG/M
3300009604\|Ga0114901_1079726	All Organisms → Viruses → Predicted Viral	1064	Open in IMG/M
3300009604\|Ga0114901_1092282	Not Available	967	Open in IMG/M
3300009620\|Ga0114912_1008364	All Organisms → Viruses → Predicted Viral	3315	Open in IMG/M
3300009620\|Ga0114912_1074593	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	835	Open in IMG/M
3300009622\|Ga0105173_1005960	All Organisms → Viruses → Predicted Viral	1608	Open in IMG/M
3300009622\|Ga0105173_1031338	Not Available	845	Open in IMG/M
3300009622\|Ga0105173_1051719	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	694	Open in IMG/M
3300010150\|Ga0098056_1022891	All Organisms → Viruses → Predicted Viral	2218	Open in IMG/M
3300010150\|Ga0098056_1116945	Not Available	906	Open in IMG/M
3300010151\|Ga0098061_1139907	Not Available	883	Open in IMG/M
3300010155\|Ga0098047_10033173	All Organisms → Viruses → Predicted Viral	2058	Open in IMG/M
3300010155\|Ga0098047_10140877	Not Available	934	Open in IMG/M
3300010155\|Ga0098047_10318958	Not Available	586	Open in IMG/M
3300011013\|Ga0114934_10027585	All Organisms → Viruses → Predicted Viral	3083	Open in IMG/M
3300011013\|Ga0114934_10033437	All Organisms → Viruses → Predicted Viral	2748	Open in IMG/M
3300013098\|Ga0164320_10398330	Not Available	682	Open in IMG/M
3300017775\|Ga0181432_1029682	All Organisms → Viruses → Predicted Viral	1461	Open in IMG/M
3300017775\|Ga0181432_1226149	Not Available	588	Open in IMG/M
3300021791\|Ga0226832_10182044	Not Available	813	Open in IMG/M
3300021792\|Ga0226836_10381758	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	806	Open in IMG/M
3300021977\|Ga0232639_1419632	Not Available	518	Open in IMG/M
(restricted) 3300024057\|Ga0255051_10115661	Not Available	946	Open in IMG/M
3300024344\|Ga0209992_10186243	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	887	Open in IMG/M
(restricted) 3300024517\|Ga0255049_10152785	All Organisms → Viruses → Predicted Viral	1052	Open in IMG/M
(restricted) 3300024518\|Ga0255048_10026536	All Organisms → Viruses → Predicted Viral	2959	Open in IMG/M
(restricted) 3300024518\|Ga0255048_10190517	All Organisms → Viruses → Predicted Viral	1002	Open in IMG/M
3300025027\|Ga0207885_105791	Not Available	883	Open in IMG/M
3300025046\|Ga0207902_1007799	All Organisms → Viruses → Predicted Viral	1110	Open in IMG/M
3300025049\|Ga0207898_1002228	All Organisms → Viruses → Predicted Viral	2129	Open in IMG/M
3300025049\|Ga0207898_1012185	All Organisms → Viruses → Predicted Viral	1066	Open in IMG/M
3300025103\|Ga0208013_1059618	All Organisms → Viruses → Predicted Viral	1018	Open in IMG/M
3300025103\|Ga0208013_1074872	Not Available	882	Open in IMG/M
3300025109\|Ga0208553_1018075	All Organisms → Viruses → Predicted Viral	1888	Open in IMG/M
3300025109\|Ga0208553_1086388	Not Available	738	Open in IMG/M
3300025109\|Ga0208553_1148262	Not Available	515	Open in IMG/M
3300025112\|Ga0209349_1043225	All Organisms → Viruses → Predicted Viral	1443	Open in IMG/M
3300025112\|Ga0209349_1122952	Not Available	720	Open in IMG/M
3300025118\|Ga0208790_1096573	Not Available	864	Open in IMG/M
3300025118\|Ga0208790_1155031	Not Available	631	Open in IMG/M
3300025125\|Ga0209644_1148401	Not Available	559	Open in IMG/M
3300025131\|Ga0209128_1067115	All Organisms → Viruses → Predicted Viral	1245	Open in IMG/M
3300025133\|Ga0208299_1137740	Not Available	780	Open in IMG/M
3300025216\|Ga0207883_1020930	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	873	Open in IMG/M
3300025251\|Ga0208182_1009764	All Organisms → Viruses → Predicted Viral	2751	Open in IMG/M
3300025251\|Ga0208182_1031303	All Organisms → Viruses → Predicted Viral	1214	Open in IMG/M
3300025257\|Ga0207899_1002312	Not Available	5308	Open in IMG/M
3300025257\|Ga0207899_1022598	All Organisms → Viruses → Predicted Viral	1153	Open in IMG/M
3300025260\|Ga0207895_1069143	Not Available	570	Open in IMG/M
3300025268\|Ga0207894_1076789	Not Available	569	Open in IMG/M
3300025277\|Ga0208180_1027118	All Organisms → Viruses → Predicted Viral	1655	Open in IMG/M
3300025286\|Ga0208315_1040399	All Organisms → Viruses → Predicted Viral	1292	Open in IMG/M
3300025286\|Ga0208315_1049521	All Organisms → Viruses → Predicted Viral	1120	Open in IMG/M
3300025287\|Ga0207903_1022648	All Organisms → Viruses → Predicted Viral	1194	Open in IMG/M
3300025287\|Ga0207903_1075760	Not Available	576	Open in IMG/M
3300025293\|Ga0208934_1027331	All Organisms → Viruses → Predicted Viral	1124	Open in IMG/M
3300025301\|Ga0208450_1035872	All Organisms → Viruses → Predicted Viral	1299	Open in IMG/M
3300026103\|Ga0208451_1017995	Not Available	776	Open in IMG/M
3300029448\|Ga0183755_1102908	Not Available	557	Open in IMG/M
3300031800\|Ga0310122_10409597	Not Available	577	Open in IMG/M
3300034629\|Ga0326756_008537	All Organisms → Viruses → Predicted Viral	1160	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	84.11%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	5.61%
Inlet	Environmental → Aquatic → Marine → Inlet	3.74%
Volcanic	Environmental → Aquatic → Marine → Volcanic	2.80%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.87%
Strait	Environmental → Aquatic → Marine → Strait	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	84.11%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	3.74%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	3.74%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.87%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	1.87%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	41.12%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	37.38%
Marine Oceanic	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic	4.67%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	3.74%
Hydrothermal Vent Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids	2.80%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	2.80%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	1.87%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.93%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.93%
Filtered Seawater	Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater	0.93%
Diffuse Hydrothermal Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids	0.93%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	0.93%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001724	Marine viral communities from the Deep Pacific Ocean - MSP-146	Environmental	Open in IMG/M
3300001726	Marine viral communities from the Deep Pacific Ocean - MSP-103	Environmental	Open in IMG/M
3300001730	Marine viral communities from the Deep Pacific Ocean - MSP-134	Environmental	Open in IMG/M
3300001736	Marine viral communities from the Deep Pacific Ocean - MSP-131	Environmental	Open in IMG/M
3300001797	Marine viral communities from the Deep Pacific Ocean - MSP-81	Environmental	Open in IMG/M
3300002231	Marine sediment microbial communities from Santorini caldera mats, Greece - red mat	Environmental	Open in IMG/M
3300006076	Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006738	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG	Environmental	Open in IMG/M
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006924	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG	Environmental	Open in IMG/M
3300006929	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008216	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar	Environmental	Open in IMG/M
3300008217	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215	Environmental	Open in IMG/M
3300008218	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6	Environmental	Open in IMG/M
3300008219	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05	Environmental	Open in IMG/M
3300008220	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908	Environmental	Open in IMG/M
3300009412	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2	Environmental	Open in IMG/M
3300009413	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12	Environmental	Open in IMG/M
3300009414	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906	Environmental	Open in IMG/M
3300009595	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500	Environmental	Open in IMG/M
3300009602	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231	Environmental	Open in IMG/M
3300009603	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904	Environmental	Open in IMG/M
3300009604	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16	Environmental	Open in IMG/M
3300009620	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51	Environmental	Open in IMG/M
3300009622	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155	Environmental	Open in IMG/M
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental	Open in IMG/M
3300011013	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG	Environmental	Open in IMG/M
3300013098	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cm	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300021791	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer	Environmental	Open in IMG/M
3300021792	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Illium_FS922 150_kmer	Environmental	Open in IMG/M
3300021977	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS925 _150kmer	Environmental	Open in IMG/M
3300024057 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_9	Environmental	Open in IMG/M
3300024344	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)	Environmental	Open in IMG/M
3300024517 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3	Environmental	Open in IMG/M
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental	Open in IMG/M
3300025027	Marine viral communities from the Pacific Ocean - LP-31 (SPAdes)	Environmental	Open in IMG/M
3300025046	Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)	Environmental	Open in IMG/M
3300025049	Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)	Environmental	Open in IMG/M
3300025103	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)	Environmental	Open in IMG/M
3300025109	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)	Environmental	Open in IMG/M
3300025112	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)	Environmental	Open in IMG/M
3300025118	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)	Environmental	Open in IMG/M
3300025125	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)	Environmental	Open in IMG/M
3300025131	Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)	Environmental	Open in IMG/M
3300025133	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)	Environmental	Open in IMG/M
3300025216	Marine viral communities from the Deep Pacific Ocean - MSP-109 (SPAdes)	Environmental	Open in IMG/M
3300025251	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)	Environmental	Open in IMG/M
3300025257	Marine viral communities from the Deep Pacific Ocean - MSP-134 (SPAdes)	Environmental	Open in IMG/M
3300025260	Marine viral communities from the Deep Pacific Ocean - MSP112 (SPAdes)	Environmental	Open in IMG/M
3300025268	Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes)	Environmental	Open in IMG/M
3300025277	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)	Environmental	Open in IMG/M
3300025286	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)	Environmental	Open in IMG/M
3300025287	Marine viral communities from the Deep Pacific Ocean - MSP-131 (SPAdes)	Environmental	Open in IMG/M
3300025293	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2 (SPAdes)	Environmental	Open in IMG/M
3300025301	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)	Environmental	Open in IMG/M
3300026103	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 (SPAdes)	Environmental	Open in IMG/M
3300029448	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082	Environmental	Open in IMG/M
3300031800	Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051	Environmental	Open in IMG/M
3300034629	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24662J20072_10173273	3300001724	Deep Ocean	MTKKKLGLIGPIIKDNHGHECXGECKGNIHVIYGRK*
JGI24653J20064_10073792	3300001726	Deep Ocean	MTKKKLGLIGPIIKDNHGHECNGECKGNIHVIYKRGA*
JGI24660J20065_10265892	3300001730	Deep Ocean	MTKKKLGLIGPIIKDNHGHECNGECKGNIHVIYGRK*
JGI24659J20068_10105681	3300001736	Deep Ocean	GGGGVMTKTKLGLIGPIIKDTYGHECNGECKGNIHVIYRRTA*
JGI24649J20148_10042804	3300001797	Deep Ocean	MTKTKLGLIGPILKDNHGHECNGECKGNIHVIYKRGA*
KVRMV2_1020011452	3300002231	Marine Sediment	MTKRKVGGSGAITKDNHGHDECNGECKGAIHVVYT
Ga0081592_11299622	3300006076	Diffuse Hydrothermal Fluids	MTKKKVGGSGAILKDNHGHDECNGECKGSIHVIYNREA*
Ga0098033_11146294	3300006736	Marine	MPLRRDTGGGSVMTKRKVGGSGAILKDNHGHDECNGECRGAIHVIYQRRGGVSET*
Ga0098033_11786172	3300006736	Marine	MTKRKVGGSGAILKDNHGHEECNGECKGAIHVIYQRRA*
Ga0098035_10491503	3300006738	Marine	MTKRKVGGSGAILKDNHGHDECNGECKGSIHVIYKRGA*
Ga0098035_10963764	3300006738	Marine	MTKKKVGGSGAILKDNHGHDECNGECKGAIHVVYTRRGGVSET*
Ga0098058_11112732	3300006750	Marine	MTKRKVGGSGAILKDNHGHEECNGECKGNIHVIYQREA*
Ga0098040_10306602	3300006751	Marine	MTKRKVGGSGAILKDNHGHEECNGECKGAIHVVYTRRGGVSET*
Ga0098040_11640572	3300006751	Marine	MTKKKVGGSGAILKDNHGHEECNGECKGAIHVVYQRRGGVSET*
Ga0098048_12027263	3300006752	Marine	MTKRKVGGSGAILKDNHGHDECNGECKGAIHVVYTRRGGVSET*
Ga0098039_10110082	3300006753	Marine	MTKKIVAGKGSILIDNHGHKECNGECKGNIHVIYNRP*
Ga0098039_11278023	3300006753	Marine	MTKRKVGGSGAILKDNHGHEECNGECKGAIHVIYRREA*
Ga0098039_11298021	3300006753	Marine	MTKKKVGGSGAILKDNHGHDECNGECKGSIHVIYKRGA*
Ga0098044_10594283	3300006754	Marine	MTKKIVAGKGSILIDNHGHKECNGECKGNIHIIYDRS*
Ga0098044_11712231	3300006754	Marine	RKVGGSGAILKDNHGHEECNGECKGAIHVIYQRRA*
Ga0098054_10060789	3300006789	Marine	MTKKKVGGSGAILKDNHGHDECNGECKGAIHVIYQRRGGVSET*
Ga0098051_11929622	3300006924	Marine	MTKRKVGGSGAILKDNHGHEECNGECKGAIHVIYQRRGGVSET*
Ga0098036_12016582	3300006929	Marine	MTKKIVAGKGSILIDNHGHKECNGECKGSIHTIYKRP*
Ga0098036_12429672	3300006929	Marine	MTKKKVGGSGAILKDNHGHEECNGECKGAIHVIYQRRA*
Ga0098052_13730943	3300008050	Marine	MTKKKVGGSGAILKDNHGHEECNGECKGAIHVIYNREA*
Ga0114898_10211205	3300008216	Deep Ocean	MMTKKKVGGSGAILKDNHGHDECNGECKGSIHVIYNREA*
Ga0114898_10379695	3300008216	Deep Ocean	MTKKVVAGKGSILIDNHGHKECNGECKGNIHVIYDRS*
Ga0114898_11781492	3300008216	Deep Ocean	KRVGGSGAILKDNHGHDECNGECKGAIHVIYRREA*
Ga0114899_10366452	3300008217	Deep Ocean	MTKKRVGGSGAILKDNHGHEECNGECKGAIHVIYRREA*
Ga0114899_10395933	3300008217	Deep Ocean	MTKRKVGGSGAILKDNHGHDECNGECKGAIHVVYTRRGEND*
Ga0114899_11350193	3300008217	Deep Ocean	MTKKKLGLIGPIIKDTHGHECNGECKGAIHVIYNREA*
Ga0114899_12241891	3300008217	Deep Ocean	TGEGGVMTKRKVGGSGAILKDNHGHEECNGECKGAIHVIYNREA*
Ga0114904_10482672	3300008218	Deep Ocean	MTKKIVAGKGSILIDNHGHKECNGECKGNIHVIYDRS*
Ga0114904_10606444	3300008218	Deep Ocean	MNKKKLGLIGPILKDNHGHECNGECKGNIHVIYNREA*
Ga0114904_10861064	3300008218	Deep Ocean	MTKKKVGGSGAILKDNHGHEECNGECKGAIHVIYRREA*
Ga0114905_12099832	3300008219	Deep Ocean	MTKKKLGLIGPIIKDNHGHECNGECEGSIHVIDHRGA*
Ga0114905_12216842	3300008219	Deep Ocean	MTKKKLGLIGPIIKDNHGHECNGECKGNIHVIYNREA*
Ga0114910_10169946	3300008220	Deep Ocean	MTKKKLGLIGAILKDNHGHECNGECKGNIHVIYNRGA*
Ga0114903_10712671	3300009412	Deep Ocean	MMTKKKVGGSGAILKDNHGHDECNGECKGSIHVIYNR*
Ga0114902_11142321	3300009413	Deep Ocean	TKRKVGGSGAILKDNHGHEECNGECKGAIHVIYRREA*
Ga0114909_10102786	3300009414	Deep Ocean	KVVAGKGSILIDNHGHKECNGECKGNIHVIYDRS*
Ga0105214_1196921	3300009595	Marine Oceanic	KTKLGLIGPIIKDNHGHECNGECKGNIHVIYKRGA*
Ga0114900_10220592	3300009602	Deep Ocean	MTKKKLGLIGAILKDNHGHECNGECKGNIHVIYNREA*
Ga0114900_10916832	3300009602	Deep Ocean	VKKRRGMTKKKLGLIGPIIKDTHGHECNGECKGAIHVIYNREA*
Ga0114900_11378941	3300009602	Deep Ocean	STERGGVMTKRKVGGSGAILKDNHGHEECNGECKGAIHVIYQRRA*
Ga0114911_10465234	3300009603	Deep Ocean	MTKKKLGLIGPILKDNHGHECNGECKGNIHVIYNREA*
Ga0114911_11714442	3300009603	Deep Ocean	MTKKRVGGSGAILKDNHGHEECNGECKGAIHVIYQRRA*
Ga0114901_10797261	3300009604	Deep Ocean	KRVGGSGAILKDNHGHDECNGECKGAIHVVYTRRGGVSET*
Ga0114901_10922824	3300009604	Deep Ocean	MMTKKKVGGSGAILKDNHGHDECNGECKGNIHVIYNRGA*
Ga0114912_10083648	3300009620	Deep Ocean	MTKRKVGGSGAILKDNHGHEECNGECKGAIHVIYNREA*
Ga0114912_10745933	3300009620	Deep Ocean	MTKRKVGGSGAILKDNHGHEECNGECKGAIHVIYQ
Ga0105173_10059604	3300009622	Marine Oceanic	MTKTKLGLIGPIIKDNHGHECNGECKGNIHVIYKRGA*
Ga0105173_10313382	3300009622	Marine Oceanic	MTKTKLGLIGPIIKDTYGHECNGECKGNIHVIYRRTA*
Ga0105173_10517191	3300009622	Marine Oceanic	MTKKKLGLIGPIIKDNHGHECNGECKGNIHVIYRRTA*
Ga0098056_10228912	3300010150	Marine	MTKRKVGGSGAILKDNHGHEECNGECKGNIHVIYNRRTA*
Ga0098056_11169454	3300010150	Marine	VMTKKKVGGSGAILKDNHGHDECNGECKGAIHVIYQRRGGVSET*
Ga0098061_11399073	3300010151	Marine	MTKKKVGGSGAILKDNHGHEECNGECKGAIHVIYQRRGGVSET*
Ga0098047_100331732	3300010155	Marine	MTKKIVAGKGSILIDNHGHKECNGECKGNIHVIYNRS*
Ga0098047_101408771	3300010155	Marine	GGGVMTKRKVGRSGAILKDNHGHEECNGECKGAIHVIYRREA*
Ga0098047_103189583	3300010155	Marine	MTKKKVGGSGAILKDNHGHDECNGECKGAIHVVYQRRGGVSET*
Ga0114934_100275852	3300011013	Deep Subsurface	MTKKKVGGSGAILKDNHGHDECNGECKGAIHVVYTRRGEND*
Ga0114934_100334378	3300011013	Deep Subsurface	RRGMTKKKLGLIGPIIKDTHGHECNGECKGAIHVIYNREA*
Ga0164320_103983303	3300013098	Marine Sediment	MTKKKLGLIGPILKDNHGHECNGECKGNIHVSYKRGA*
Ga0181432_10296822	3300017775	Seawater	MVRKKVGGSGAILKDNHGHEECNGECKGNIHVIYQREA
Ga0181432_12261492	3300017775	Seawater	MTKRKVGGSGAILKDNHGHDECNGECKGSIHVIYNREA
Ga0226832_101820443	3300021791	Hydrothermal Vent Fluids	MTKKRVGGSGAILKDNHGHEECNGECKGNIHVIYQREA
Ga0226836_103817582	3300021792	Hydrothermal Vent Fluids	MTKTKLGLIGPIIKDNHGHECNGECKGNIHVIYKRGA
Ga0232639_14196321	3300021977	Hydrothermal Vent Fluids	RTGGGVMTKKKLGLIGPIIKDNHGHECNGECKGNIHVIYKRGA
(restricted) Ga0255051_101156612	3300024057	Seawater	MVRKKVGGSGAILKDNHGHDECNGECKGNIHVIYQREA
Ga0209992_101862432	3300024344	Deep Subsurface	MTKKKLGLIGPIIKDTHGHECNGECKGAIHVIYNREA
(restricted) Ga0255049_101527854	3300024517	Seawater	MVRKKVGGSGAILKDNHGHEECNGECKGSVHVIYQREA
(restricted) Ga0255048_100265362	3300024518	Seawater	MVRKKVGGSGAILKDNHGHDECNGECKGNIHVIYQRTA
(restricted) Ga0255048_101905172	3300024518	Seawater	MTKKKVGGSGAILKDNHGHEECNGECKGSVHVIYQREA
Ga0207885_1057912	3300025027	Marine	MTKTKLGLIGPIIKDNHGHECNGECKGNIHVIYRRGA
Ga0207902_10077994	3300025046	Marine	MTKKKLGLIGPIIKDNHGHECNGECKGNIHVIYNREA
Ga0207898_10022282	3300025049	Marine	MTKTKLGLIGPILKDNHGHECNGECKGNIHVIYKRGA
Ga0207898_10121854	3300025049	Marine	MMTKKKVGGSGAILKDNHGHDECNGECKGSIHVIYNREA
Ga0208013_10596184	3300025103	Marine	MTKRKVGGSGAILKDNHGHEECNGECKGNIHVIYNRRTA
Ga0208013_10748724	3300025103	Marine	MTKKKVGGSGAILKDNHGHDECNGECKGAIHVIYQRRGGVSET
Ga0208553_10180755	3300025109	Marine	MTKKKVGGSGAILKDNHGHEECNGECKGAIHVVYQRRGGVSET
Ga0208553_10863881	3300025109	Marine	MTKKIVAGKGSILIDNHGHKECNGECKGNIHVIYNRS
Ga0208553_11482621	3300025109	Marine	SSKERGGVMTKRKVGGSGAILKDNHGHEECNGECKGAIHVIYQRRA
Ga0209349_10432254	3300025112	Marine	MTKKKVGGSGAILKDNHGHEECNGECKGAIHVIYQRRA
Ga0209349_11229524	3300025112	Marine	TKRKVGGSGAILKDNHGHEECNGECKGNIHVIYNRRTA
Ga0208790_10965732	3300025118	Marine	MTKKKVGGSGAILKDNHGHDECNGECKGAIHVVYTRRGGVSET
Ga0208790_11550313	3300025118	Marine	MTKKIVAGKGSILIDNHGHKECNGECKGSIHTIYKRP
Ga0209644_11484012	3300025125	Marine	MTKKKVGGSGAILKDNHGHDECNGECKGSIHVIYRREVC
Ga0209128_10671153	3300025131	Marine	MTKKKVGGSGAILKDNHGHEECNGECKGAIHVVYTRRGGVSET
Ga0208299_11377401	3300025133	Marine	MTKKKVGGSGAILKDNHGHEECNGECKGAIHVIYQRRGGVSET
Ga0207883_10209304	3300025216	Deep Ocean	MTKTKLGLIGPIIKDNHGHECNGECKGNIHVIYRRTA
Ga0208182_10097648	3300025251	Deep Ocean	MTKRKVGGSGAILKDNHGHEECNGECKGAIHVIYQRRA
Ga0208182_10313032	3300025251	Deep Ocean	MTKKVVAGKGSILIDNHGHKECNGECKGNIHVIYDRS
Ga0207899_100231210	3300025257	Deep Ocean	MTKKKLGLIGPIIKDNHGHECNGECKGNIHVIYGRK
Ga0207899_10225983	3300025257	Deep Ocean	MSKRKLGLIGPIIKDTYNHQCNGECKGNIHMIERKGE
Ga0207895_10691432	3300025260	Deep Ocean	RRTGGGGVMTKKKLGLIGPIIKDNHGHECNGECKGNIHVIYKRGA
Ga0207894_10767893	3300025268	Deep Ocean	ERGGVMTKKKVGGSGAILKDNHGHDECNGECKGAIHVVYTRRGGVSET
Ga0208180_10271185	3300025277	Deep Ocean	MTKKKLGLIGAILKDNHGHDECNGECKGSIHVIYNREA
Ga0208315_10403992	3300025286	Deep Ocean	MTKKRVGGSGAILKDNHGHDECNGECKGAIHVIYQRRGGVSET
Ga0208315_10495213	3300025286	Deep Ocean	MTKRKVGGSGAILKDNHGHEECNGECKGAIHVIYNREA
Ga0207903_10226481	3300025287	Deep Ocean	GGGVMTKTKLGLIGPIIKDNHGHECNGECKGNIHVIYGRK
Ga0207903_10757603	3300025287	Deep Ocean	MMTKKRVGGSGAILKDNHGHDECNGECKGNIHVIYRRTA
Ga0208934_10273314	3300025293	Deep Ocean	MTKKRVGGSGAILKDNHGHEECNGECKGAIHVIYRREA
Ga0208450_10358722	3300025301	Deep Ocean	MTKKKLGLIGPILKDNHGHECNGECKGNIHVIYNRGA
Ga0208451_10179954	3300026103	Marine Oceanic	GGVMTKTKLGLIGPIIKDNHGHECNGECKGNIHVIYKRGA
Ga0183755_11029082	3300029448	Marine	MTKRKVGGSGAILKDNHGHDECNGECKGAIHVVYQRRGEND
Ga0310122_104095972	3300031800	Marine	MTKKKLGLIGPIIKDTHGHECNGECKGNIHVIYKRGA
Ga0326756_008537_303_416	3300034629	Filtered Seawater	MNKRKLGLIGPIIKDNHQHQCNSECRGDIHMIERKAC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters