3300001796: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_QV12A

Overview

Basic Information

• IMG/M Taxon OID: 3300001796
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053062 | Gp0055517 | Ga0004662
• Sample Name: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_QV12A
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 99192175
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid → Serpentinite Rock And Fluid Microbial Communities From Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) And Ligurian Springs (Italy)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → rock
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: California, McLaughlin Reserve
• Coordinates
  • Lat. (^o): 38.8739528
  • Long. (^o): -122.4391613
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006324	Metagenome	376	Y
F009686	Metagenome / Metatranscriptome	314	Y
F021521	Metagenome / Metatranscriptome	218	Y
F069970	Metagenome	123	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24121J20154_1000127	Not Available	24815
JGI24121J20154_1000508	All Organisms → cellular organisms → Bacteria	9640
JGI24121J20154_1000909	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6612
JGI24121J20154_1013391	All Organisms → cellular organisms → Bacteria	1111
JGI24121J20154_1024110	Not Available	694
JGI24121J20154_1027677	Not Available	629
JGI24121J20154_1030348	All Organisms → cellular organisms → Bacteria	590
JGI24121J20154_1034211	All Organisms → cellular organisms → Bacteria	545
JGI24121J20154_1038515	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24121J20154_1000127	JGI24121J20154_100012731	F009686	MNERQMFERSFQRPSNYFKLPASVQWDIDKSLGILDWMGEGLSDEDMKRFNDHYKSSES*
JGI24121J20154_1000508	JGI24121J20154_100050811	F021521	MAGYSHRTAQPPILAAFLPWGGSAGAGRVRPAGAKVRVETYFP*
JGI24121J20154_1000909	JGI24121J20154_10009094	F069970	MTNTIQIGSKVTFDNDKIELFKSETSSADKEVQQYQKIVLGGINQVGIVKELGFALTTVAYPDGWEVPVPTKYLVVLPSEE*
JGI24121J20154_1013391	JGI24121J20154_10133912	F006324	YVSRQICDGPGVCGTSDFNGDGDFGTDADIESFFACLGGNCCPTCWSAGADFNGDDDVGTDADIESFFRVLGGGVC*
JGI24121J20154_1024110	JGI24121J20154_10241102	F006324	DQDIEAFFACLGGTCCPTCFCQGSDFNGDGDFGTDADIEAFFRVLGGGGC*
JGI24121J20154_1027677	JGI24121J20154_10276771	F006324	NGDGDFGTDADIEAFFACLSGNCCPACFVGGSDFNGDGDFGTDADIEAFFRVLGGGTC*
JGI24121J20154_1030348	JGI24121J20154_10303481	F006324	NCCPACFAGGSDFNADGDAGTDADIESFFRVLGGGAC*
JGI24121J20154_1034211	JGI24121J20154_10342111	F006324	ACLGGNCCAACFCQGSDFNGDGDFGTDQDIEAFFRVLGGGNC*
JGI24121J20154_1038515	JGI24121J20154_10385151	F006324	SSDFNGDGDFGTDGDIEAFFSCLGGTCCATCFCQGSDFNGDGDFGTDQDIESFFRVLAGGQC*