3300001763: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Beebe Supr51

Overview

Basic Information

• IMG/M Taxon OID: 3300001763
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0094242 | Gp0056764 | Ga0012996
• Sample Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Beebe Supr51
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 76082151
• Sequencing Scaffolds: 17
• Novel Protein Genes: 17
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
Not Available	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	2
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium mastitidis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal plume → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Beebe Vents, Mid Cayman Rise
• Coordinates
  • Lat. (^o): 18.35
  • Long. (^o): -81.85
  • Alt. (m): N/A
  • Depth (m): 4000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001651	Metagenome / Metatranscriptome	657	Y
F009892	Metagenome / Metatranscriptome	311	Y
F012464	Metagenome / Metatranscriptome	280	Y
F032684	Metagenome / Metatranscriptome	179	Y
F034189	Metagenome / Metatranscriptome	175	Y
F041257	Metagenome / Metatranscriptome	160	N
F052659	Metagenome / Metatranscriptome	142	N
F057445	Metagenome / Metatranscriptome	136	N
F058220	Metagenome / Metatranscriptome	135	N
F063069	Metagenome	130	Y
F076171	Metagenome	118	N
F089023	Metagenome	109	Y
F096028	Metagenome	105	Y
F101330	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
supr51_1000210	All Organisms → cellular organisms → Bacteria	21512
supr51_1000258	Not Available	34734
supr51_1000933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	6746
supr51_1001159	All Organisms → cellular organisms → Bacteria	5892
supr51_1002132	Not Available	3959
supr51_1006063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1993
supr51_1007571	All Organisms → cellular organisms → Archaea	1721
supr51_1008795	Not Available	1556
supr51_1012359	Not Available	1231
supr51_1013353	Not Available	1168
supr51_1013426	All Organisms → cellular organisms → Bacteria	1163
supr51_1016852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	991
supr51_1020777	Not Available	853
supr51_1023799	Not Available	774
supr51_1029539	Not Available	659
supr51_1031719	Not Available	622
supr51_1040105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium mastitidis	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
supr51_1000210	supr51_10002104	F057445	LSKAAVNEILPKAVSLILIKERLENKRKKDFLDLSDLFSVAPDVIKIM*
supr51_1000258	supr51_10002583	F052659	MLLSGNPGTETRSAVFIDGRLISSLPELNYQSIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVFLWAEV*
supr51_1000933	supr51_10009338	F032684	MILLCTLRVLALIDKFKSNFSVFKVMFLPFGIITKNTLKNIIQPKITPTDKNANLDPKNFVKQNEITAPIMSSTTIKIILLFINLD
supr51_1001159	supr51_10011597	F001651	LPKGHSKWMTIGGKPIPEGGYIVPLQNGKKIALAQRRHRVIQAKIEGRSEAQIAEQEGVVQYTIWKDIRAYLGEVRREDKAAVQAEYDLQRARYERLLLRWWDHAIGEDSDHAARATGIVLDILRRLDTIGGLIPEKPLIQLQQQNVMVGGVTFADLLREAMDGAGA*
supr51_1002132	supr51_10021325	F096028	VSHITISVDFRVDWASFELIDGDFHSHSFGGSVKGNDSMLEEN*
supr51_1006063	supr51_10060634	F063069	LKLNKPIKKLWPILEKKVKTNPKIIILKLDLTISIIIL*
supr51_1007571	supr51_10075712	F089023	VQPYAIGSVSLGSAEEPYDSDMTHSYRLTEGRLIRYPVIQW*
supr51_1008795	supr51_10087951	F096028	VSHITISVDFRVDWASFELIDGDFHSHSFGESVKRNDSMLEEN*
supr51_1012359	supr51_10123591	F101330	MWLQNNYTVSFCGFIGVCIGYFTGHKEICIMIGVGIGILIRIVQSKSK*
supr51_1013353	supr51_10133532	F012464	LGARQSATAVTSPVDDTVGTDALDVAHVTVGLAIVLLFASFTVGTSVVVSPHDVKLRLVGASVTLDTT*
supr51_1013426	supr51_10134261	F034189	RIMTKLVKWASNDGQIIKSGLSDGRRAKFLPSVVGFAYDWLRIEGHLGNVG*
supr51_1016852	supr51_10168522	F058220	MQIFVDCDDTLVLYDSHTGIHPYGSHTAIHPYGVRHGEPWRPNQPLVDALLETEHPVFVWSGGGAWYAEIVAGKLGLDFPCLDKDETAFELIQEGDVVIDDQDLGGRRTHNPFEWPETKGRLNPDQL*
supr51_1020777	supr51_10207773	F009892	TRSQFLTKLEQNGISLDESRMHEVNYYFNLWCDTQKQSGKGAMDESGFPAFITWMKKQ*
supr51_1023799	supr51_10237992	F012464	VSSPTVTEADPLAEPDVAMIEIDPVATEVTNPADETVATAGFVDDHVTVAPGIVAPSASVTVGVSVAVSANEENERLVGDSVTEDAT*
supr51_1029539	supr51_10295392	F076171	FFEKLAIAFPDLNVSWFLTGEGEMFTENLDYAEKTILENYRKLPDEGKIGFEVRTNLYEREYLEHKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENTEADIQKLISLDAEYIKEFLT*
supr51_1031719	supr51_10317191	F041257	PSGSEEGDVVDPRSEQPEGPFDHERFQTLTVLAHVAGQVMDRYAIKGFEGFTNRQANWACKLQSFFNLSNPFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEERTSRMVAIASGLLPEPIDVTSPGDIPPSPPGTQ*
supr51_1040105	supr51_10401051	F041257	VIDPWSEVTDGLFDHGRIKTLTVLAHVAGQVMDRYSIKGFEGFTKRQADWACKLQEFFNLSNQSEALVQLLFTFQFSQKERFELEMRKSTTVDRSDPLSKALMAWVWWDPGSETSREDRFYPWEYGEEQTSRMVAIASGLLPEPIDITPVPGERTKVPPLDPQISP