3300001682: Cattle waste upflow reactor

Overview

Basic Information

• IMG/M Taxon OID: 3300001682
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095549 | Gp0055760 | Ga0012545
• Sample Name: Cattle waste upflow reactor
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 627196950
• Sequencing Scaffolds: 7
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Activated Sludge Microbial Communities From The University Of Illinois, Usa, From Bioreactors Seeded With Cattle Waste
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Activated Sludge → Activated Sludge Microbial Communities From The University Of Illinois, Usa, From Bioreactors Seeded With Cattle Waste

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: University of Illionis
• Coordinates
  • Lat. (^o): 40.103885
  • Long. (^o): -88.225087
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039153	Metagenome / Metatranscriptome	164	Y
F046098	Metagenome / Metatranscriptome	152	Y
F051061	Metagenome / Metatranscriptome	144	N
F059692	Metagenome / Metatranscriptome	133	N
F061390	Metagenome / Metatranscriptome	132	Y
F069434	Metagenome / Metatranscriptome	124	Y
F071725	Metagenome	122	N
F076577	Metagenome	118	N
F084897	Metagenome / Metatranscriptome	112	Y
F093482	Metagenome	106	N
F099347	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SAHD_10000881	All Organisms → cellular organisms → Bacteria	60469
SAHD_10002187	All Organisms → cellular organisms → Bacteria	59330
SAHD_10002991	All Organisms → cellular organisms → Bacteria	32326
SAHD_10014773	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	5303
SAHD_10015939	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	4907
SAHD_10025190	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5826
SAHD_10055135	Not Available	1765

Sequences

Scaffold ID	Protein ID	Family	Sequence
SAHD_10000881	SAHD_1000088110	F084897	MGKKKSDAFVKTSKKRFEVADASEVRLGVGGNFRAEQIGTLGGDSGDVQ*
SAHD_10002187	SAHD_1000218750	F046098	MRIILILAAIVLLIVGILGLFPSVGWAAVPLWRAILEIVVGGLVLIVGIRKR*
SAHD_10002991	SAHD_1000299111	F093482	VEERTLDELWERIEKEDPVLWAQMDRFYGPMSKKILLMEWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHGGKCLFEHKKRSRA*
SAHD_10002991	SAHD_1000299116	F059692	MDKETEQLILKKLQIDYLSLHAIKSDIEKIISALVVDLDPRVNEIQEIQDQIKGYLSEP*
SAHD_10002991	SAHD_1000299118	F099347	MNLAEFIENFEAFITYIEEAWEQKDLEILKAIVSDCEDFINAYGHQFKCYSQTAKEWKESYKKNREKRKEIAKGICEWCGRKKGTNCHHLAKRGRLVLYNDVRLLRILCINCHRLFH*
SAHD_10002991	SAHD_1000299136	F051061	MSFLDKLKEKAKQRERKSLYLPELDETVYWYPMTAGERQRILNAAGFKWARDAVQMDNSKYKASLIIEKLEDKDGKKIFSNTPEHKDLLINKIDDEILTRIVSAIDPSKTEEQQIEEAKNG*
SAHD_10002991	SAHD_100029918	F076577	MFWPENKVISLMEIVFHFGAINYELNNGKKIREMWKEFKENCIDKRLKYINPDPRCTHPVNLDVLDHCWGYAEKIDKGEEIDMNELCEGCEFFREEVKNENPTQ*
SAHD_10002991	SAHD_100029919	F071725	MKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLFAHDEEIKAIREKWERKEINKVGLFHELEKLSKVESLPG*
SAHD_10014773	SAHD_100147732	F061390	MVIISKDEAERLDRLVARYGQRTVMEALEAKMMGSWSVTYFPDVDSWEVSDYGDQNFIIKDGGKCNCERGFGKNGSCIHQVLIELKKWDLEDELGVE*
SAHD_10015939	SAHD_1001593910	F061390	MVVTNKEAERLDRLVTQYGQRTVMEALEAKMMGGWSVTYFPDVDSWEVSDYGDQSFVIKDGGKCNCGKGYGKNGSCVHQVLVELKKWDLEDELGVE*
SAHD_10025190	SAHD_100251905	F039153	MKYTVSSSEKSKMYNTEVIFFNNSKQASRLNVSPLHKEIKQWAKSQGYTPKLYLRSVAIECNNPDLPKEYELLVVDLIQIIANGQAYLVAIDTLGPSENNLHFILEEHAKLRKAIYVTAECLDDVICEIQDNEHNHKGDPCVPDIKSRRSFQGDYSILFSPENLTWKTARYERA*
SAHD_10055135	SAHD_100551355	F069434	MNRIFDKTTCWNIFDHTDSPDPLWDLQRQGKHREAQKAAIRLTLRHPLRMLPVIVNCLRCGRS*