3300001627: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF024

Overview

Basic Information

• IMG/M Taxon OID: 3300001627
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057305 | Ga0003863
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF024
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3602557
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.471116
  • Long. (^o): -72.17263
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003124	Metagenome / Metatranscriptome	506	Y
F009027	Metagenome / Metatranscriptome	324	N
F038357	Metagenome / Metatranscriptome	166	Y
F051575	Metagenome	144	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20258J16339_100121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1344
JGI20258J16339_100339	All Organisms → cellular organisms → Bacteria → Acidobacteria	843
JGI20258J16339_100490	All Organisms → cellular organisms → Bacteria	699
JGI20258J16339_100577	All Organisms → cellular organisms → Bacteria	638

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20258J16339_100121	JGI20258J16339_1001211	F038357	MCPGDPLGNHRQRPIAVSLVFEPVLAHEDGMGLTAPLPHQGRAGLQRSAGVERTSAFLELSRQNLQAALQGGGRAAMGTLLQLIGETPDDQIATEAQRRADVMQSPPRTPQLLCRLTDQLSDFAINLCQCQTSQPVLPAAVCTERLARVLASRSVVEWGFHGLAGSAMRYTRPRSSLAEARGSPSFFFKVPEKTPRTV*
JGI20258J16339_100339	JGI20258J16339_1003392	F003124	MVYNVYMATTKQARRSVTLPPQVDRQIDTIAKNRRLSGNRVLVELVELGLEARKQKEKAFFELAKKFRDADDPQEVKQLGDELGRFVFGE*
JGI20258J16339_100490	JGI20258J16339_1004902	F009027	DAIIAERQLPRIRVIDAVHPLFGQPLEVSPSGLIRRIGWIRVVLPDGRHRWVPQKATDLNVSACEARPNRDLPLVSVRTLIPLAEYVRARLSALGERFDETSGHTADPAVRAGIAGSTADLGAEIVADDDADNTTTAGEAGGTATPVNAGRSRRRRFDRGASR*
JGI20258J16339_100577	JGI20258J16339_1005772	F051575	MRIGGEAPGGGPILSVGLKCQVEYGFPPPRIVNSAVVRKASASAEWC*