3300001625: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF014

Overview

Basic Information

• IMG/M Taxon OID: 3300001625
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057265 | Ga0003853
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF014
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2128820
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000098	Metagenome / Metatranscriptome	2300	Y
F000295	Metagenome / Metatranscriptome	1349	Y
F001274	Metagenome / Metatranscriptome	733	Y
F003565	Metagenome / Metatranscriptome	479	Y
F007280	Metagenome / Metatranscriptome	354	Y
F038357	Metagenome / Metatranscriptome	166	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20248J16329_10002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3288
JGI20248J16329_10038	All Organisms → cellular organisms → Bacteria	1668
JGI20248J16329_10209	All Organisms → cellular organisms → Bacteria	894
JGI20248J16329_10287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	728
JGI20248J16329_10344	Not Available	651

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20248J16329_10002	JGI20248J16329_100021	F003565	RPEGANHQWRKIPPGELSIDPVANERLGWVTGRAGAS*
JGI20248J16329_10038	JGI20248J16329_100382	F038357	MCPGDPLGNHRQRPIAVSLVFEPVLAHEDGMGLTAPLPHQGRAGLQRSAGVERTSAFLELSRQNLQAALQGGGRAAMGTLLQLIGEPPDDQIATEAQRRADVMQSPPRTPQLLCRLTDQLSDFAINLCQCQTSQPVLPAAVCTERLARVLASRSVVEWGFHGLAGSAMRYTRPRSSLAEARGSPSFFFKVPEKTPRTV*
JGI20248J16329_10209	JGI20248J16329_102093	F000295	TPSTSTKAPAAAPSRERRRTRVAKPAGGKRSSLTLNDQVLALATGKTQQEITAACKGARPNHVGAALARHKRAGRIEEREGKLYATQSTETTARRTDP*
JGI20248J16329_10287	JGI20248J16329_102872	F038357	MGVSAPLPHQGRAGLQHSAGIERTSASLELSRQNPQAALQGAGWTALGALLQLIGEASDDQIATEAQRRSGVMQCPPRTPQLLCRPIDQSGNLAGFKLGQVPVSKSVVPDVDWTETGGRLARVLASRSVVNWRFHR
JGI20248J16329_10344	JGI20248J16329_103442	F001274	GEGGAAVTIYQITLRDRETQTVVGYYNGAWTTDRRRALAFRRREAAEAHAARMRDRCPRNAELINVEEIAAAN*
JGI20248J16329_10404	JGI20248J16329_104041	F000098	MRIYIIGNDGITLCRKAPATVNDGEIAVASNEELHAARLSGKRLLALWNALPGVEKRKKVGDRDALIDQ
JGI20248J16329_10465	JGI20248J16329_104651	F007280	LPGKLDNIGRETLLVVTTXXXLALXRAMLPERRXGATLGDMQLRSDLLNAGTATRGA*