3300001618: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF030

Overview

Basic Information

• IMG/M Taxon OID: 3300001618
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057311 | Ga0003869
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF030
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1434058
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.471116
  • Long. (^o): -72.209488
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009040	Metagenome / Metatranscriptome	324	Y
F041178	Metagenome / Metatranscriptome	160	N
F050559	Metagenome / Metatranscriptome	145	Y
F055082	Metagenome / Metatranscriptome	139	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20264J16347_10005	All Organisms → cellular organisms → Bacteria	2773
JGI20264J16347_10039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1666
JGI20264J16347_10161	Not Available	1063
JGI20264J16347_10219	Not Available	868

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20264J16347_10005	JGI20264J16347_100052	F055082	MDPAGRRLKIPVWMLLPECTEIKISQRPHLGKEALLSLASLIASQLASKDRVHDNLLQTPVSGCEGGRRGATSTSGPDDPKGMRCRANGRSDTRRSDRSHGPRSGSGLSRGGGKSQ*
JGI20264J16347_10039	JGI20264J16347_100392	F041178	VNAEQASHDEGLVKGSHHGDIERSPVASVSKVQAHLRDAARFRARSTSHAVAAHSSCTKIPLSAGRAQEDENHSRKRHFRPWLATVRLPGSARTDQVLEDDGITLVYSLGNLHRDALDNDPGGHVFPERDQ*
JGI20264J16347_10161	JGI20264J16347_101612	F009040	LRVRQSGADLKPPQAASVKSRGWERCGNAGTMIPAGMVERGERKQTVDEVSKAD*
JGI20264J16347_10219	JGI20264J16347_102192	F050559	KNLGLLGDRKIVPAVDHRFALSNPALVSAPSKKLISAVRAPCGVETEGR*