3300001616: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF034

Overview

Basic Information

• IMG/M Taxon OID: 3300001616
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057315 | Ga0003873
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF034
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1629705
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.550409
  • Long. (^o): -72.180244
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011329	Metagenome / Metatranscriptome	292	Y
F035666	Metagenome / Metatranscriptome	171	Y
F064135	Metagenome / Metatranscriptome	129	Y
F087852	Metagenome / Metatranscriptome	110	Y
F094011	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20268J16351_10069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1034
JGI20268J16351_10269	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564
JGI20268J16351_10328	All Organisms → cellular organisms → Bacteria	522
JGI20268J16351_10335	Not Available	517
JGI20268J16351_10343	Not Available	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20268J16351_10069	JGI20268J16351_100692	F035666	MVPGHRYVGWLCKNRSCGALIAIALPPAGSKTAVPEFDDQLTAIKCPHCGDEDLYRWSARSEHEYTLKSAGN*
JGI20268J16351_10269	JGI20268J16351_102692	F087852	MSFPRHEEIYRPMGMAKRLGRPTCGHPSAHRYDEFPAGYSLVGCAPAEPASASPAGAHGAPEASSSTIEIQRTANYLLTACLTRGDNPKSL
JGI20268J16351_10328	JGI20268J16351_103281	F064135	MSPVNETVTEFERNARAVLAESVSRIDARTRSRLNQARQAALAAAGTRRARWWSSFTLMP
JGI20268J16351_10335	JGI20268J16351_103352	F094011	RKEALVAGDVTADLPSQYLSEQGKSPVILLVRSIPRVRNDSNQYCLVSEKLAGATSVQQWDVYGWVIAPNASQALPLQRQVLDDKAVSHPRSLRGLAAALWFFAERMSGQPSS*
JGI20268J16351_10343	JGI20268J16351_103432	F011329	LRPSAQPDDALVALMYETSGGFVVSYFGPALANPTLPGLDAAIAEARAELLHYINRRGENRPAGITRPGLSLWLTERDDETVMGIPLK*