3300001614: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF015

Overview

Basic Information

• IMG/M Taxon OID: 3300001614
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057296 | Ga0003854
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF015
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4426136
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ethanoligenens → Ethanoligenens harbinense	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019358	Metagenome / Metatranscriptome	230	Y
F041450	Metagenome / Metatranscriptome	160	Y
F053437	Metagenome / Metatranscriptome	141	Y
F055918	Metagenome / Metatranscriptome	138	Y
F058308	Metagenome / Metatranscriptome	135	Y
F064134	Metagenome / Metatranscriptome	129	Y
F064181	Metagenome	129	Y
F075406	Metagenome / Metatranscriptome	119	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20249J16330_100034	All Organisms → cellular organisms → Bacteria	1153
JGI20249J16330_100158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	866
JGI20249J16330_100190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	821
JGI20249J16330_100568	Not Available	653
JGI20249J16330_100684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ethanoligenens → Ethanoligenens harbinense	621
JGI20249J16330_100863	All Organisms → cellular organisms → Bacteria	588
JGI20249J16330_101148	All Organisms → cellular organisms → Bacteria	543
JGI20249J16330_101374	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20249J16330_100034	JGI20249J16330_1000341	F064181	VAGEGHGQSMNSAAIGIALVVLVVGCILGWHANRAHTAHGDIKTTHGRIAGYRKTRLKSGLWAIG
JGI20249J16330_100158	JGI20249J16330_1001582	F019358	GGLILIVLAAVVVTQPGRYRVFVVTAVLTGLVFTAITSAFAWGGPGQPVTIKVEHGARYSTLPILLLDAALIVAADVCARRWPRPKAIVAVVALVAVLAVGWATDFRYPVRRLAGPASAWKTTANAWIRHCERKPAGTITVVFHDWWSTAPLDTTFSCTSLRR*
JGI20249J16330_100190	JGI20249J16330_1001902	F075406	THQRWDAVRQDGDRADLRLVEERTLVPGAVATLVPPRDVHNHGHVAGSGPSPYSLILLGDNMLLFDREEYDPERGTWRALAAGXPGRDNR*
JGI20249J16330_100568	JGI20249J16330_1005681	F058308	MPLWRIRIAVPDDPGSRDALNNVLATQPEARLRELPGRTATSVTTGEIVVELPQDDGLVGVLSALHQISPQVFVSRADMPEPAPGP*
JGI20249J16330_100684	JGI20249J16330_1006841	F053437	VQSSRRLLRDTLSACLAVRPDITVVGKVAEPDAIFELCELRHPDVVIMDAGARLREISARVAALTKRYPELNVIVTYRD
JGI20249J16330_100863	JGI20249J16330_1008632	F041450	LLRQALETFQRIGAAEAPDLLAELDTLTGPPPAR*
JGI20249J16330_101148	JGI20249J16330_1011482	F064134	GHAERNLALIRQLEAETRELLARLDEPDLEQSAWLQEVTSAERQAGHHRRPETATAHPSIF*
JGI20249J16330_101374	JGI20249J16330_1013741	F055918	QLRAAEWFEATGHTRRAAQHFWAAQQTDRALLLLQDRVVPDFLRVPTGPEPLVMSSVNPSMLTEPPDRLLGLAAHLLLSGDTAHGGEYLDLLEHAGKIPPDSALAARFAAFQSFRYGVTGQLERAVRAALAARTTQERRQLTDEWDITVPLVLIRVYTCLGDFPAAEREAA