3300001584: Marine microbial communities from the Deep Pacific Ocean - MP2097

Overview

Basic Information

• IMG/M Taxon OID: 3300001584
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054393 | Ga0000765
• Sample Name: Marine microbial communities from the Deep Pacific Ocean - MP2097
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31712517
• Sequencing Scaffolds: 21
• Novel Protein Genes: 22
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	3
Not Available	15
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga → Mesotoga prima	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): 14.53
  • Long. (^o): -118.77
  • Alt. (m): N/A
  • Depth (m): 294

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004630	Metagenome / Metatranscriptome	430	Y
F007138	Metagenome	357	Y
F012582	Metagenome / Metatranscriptome	279	Y
F013235	Metagenome	273	N
F013468	Metagenome	271	Y
F019844	Metagenome	227	N
F022427	Metagenome / Metatranscriptome	214	N
F030885	Metagenome / Metatranscriptome	184	Y
F044546	Metagenome	154	Y
F049233	Metagenome / Metatranscriptome	147	N
F050662	Metagenome	145	N
F056681	Metagenome	137	Y
F063767	Metagenome	129	N
F065937	Metagenome / Metatranscriptome	127	N
F071316	Metagenome	122	Y
F074478	Metagenome / Metatranscriptome	119	N
F077905	Metagenome	117	Y
F086697	Metagenome / Metatranscriptome	110	N
F090499	Metagenome	108	N
F096046	Metagenome / Metatranscriptome	105	Y
F096068	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12074J15755_1000984	All Organisms → Viruses → Predicted Viral	2621
JGI12074J15755_1001448	All Organisms → Viruses → Predicted Viral	2070
JGI12074J15755_1002762	Not Available	1409
JGI12074J15755_1002973	Not Available	1344
JGI12074J15755_1003604	All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	1195
JGI12074J15755_1004053	All Organisms → Viruses → Predicted Viral	1104
JGI12074J15755_1004178	Not Available	1083
JGI12074J15755_1004228	Not Available	1075
JGI12074J15755_1004395	Not Available	1049
JGI12074J15755_1005588	Not Available	895
JGI12074J15755_1007019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	766
JGI12074J15755_1007063	Not Available	762
JGI12074J15755_1007965	Not Available	706
JGI12074J15755_1008058	Not Available	701
JGI12074J15755_1009323	Not Available	635
JGI12074J15755_1009542	Not Available	625
JGI12074J15755_1009879	Not Available	612
JGI12074J15755_1010561	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga → Mesotoga prima	586
JGI12074J15755_1010647	Not Available	583
JGI12074J15755_1011270	Not Available	564
JGI12074J15755_1013289	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12074J15755_1000984	JGI12074J15755_10009845	F030885	MKHITDPSISIINSSFTKGVALPYTVQMMLNDVDNHKXFRKMMSEKFYXKDISIRISKYINEASIHFRNEEDVAEFLLLVGE*
JGI12074J15755_1001448	JGI12074J15755_10014481	F096046	ACGGIQGHFGVTPVTFCEWCYGSIYDMVEQDIRDNIREQMNEEDKEDIKTILDAVGIDYKIVENAYVNKQRFFNFRFDEPCGMSRK*
JGI12074J15755_1002519	JGI12074J15755_10025191	F096068	MALYEDIVLFCKRELNIPLDILISVEQADLSEDSVKGWAIDS
JGI12074J15755_1002762	JGI12074J15755_10027623	F077905	TDFYRFLPIFRTFLGDFNPQKLPSRGLRTLWEWKNRVLLEEYYIFNVAIPLEVQREQSYETQ*
JGI12074J15755_1002973	JGI12074J15755_10029731	F013235	KIMSTRLKTKFKNNKQGWTSKLETPRGVNTPYIGSYMNSKLGDVKVSNKSLETFYGDKIKP*
JGI12074J15755_1003604	JGI12074J15755_10036042	F022427	SGLAGAGGTYDIDQTSTGTINLDVNSASANVSIEQTSSGTVNIDADGGASFTADIDQDNASTLSLHHDGASGDYVILQTGGSGDIIDLEVNGASANVDIIQRD*
JGI12074J15755_1004053	JGI12074J15755_10040531	F044546	PHTKQRHKPPKYCSQCKREVYHTTHSASSYWVDWYGTELKPICVDCYKR*
JGI12074J15755_1004178	JGI12074J15755_10041782	F056681	MNGAIYALRLKLSDFLNDPLESLVVDKIHEIYKIHTFKLQLWYDEGEVAAKDLKSFIEKYESILHYKTTIRPNRVADHAQFTWYNIIHG
JGI12074J15755_1004228	JGI12074J15755_10042282	F019844	VLHILKDFINRLFGFKDKKINKPKLTLVVNKTDNQEGKSENAIFSIIEEQFTFEEDISEEYRNELKIHLIESIENKVHPWDFEKNLDFKLKEPDKIYYLYMYYVLYIDIFEQDLFNKFIKLWYENNLDDTTKSDDELNNTALRLLKYDILGFNLINGSKEEPIKELKEV
JGI12074J15755_1004395	JGI12074J15755_10043951	F049233	MKITETDYQRKVLGDIGEKIVGNYMSRIGRTVEMSTDPFDSEKDMIVNGKPLEVKTQVPYCLEKSFTIRKNQLNKCLNVDYFVIVQAPCEYLNEAAIWKVKKGFTYNTVKLKGGGERLSIPMYQTNVIKKMDIVGEDKDLLRKYSTDYGG*
JGI12074J15755_1005588	JGI12074J15755_10055881	F004630	MDGLDEXYGHRKLMSEXYKDDGSVAKIYQVINGMDGEHSFFSITYKDAAGSRITHEDFKFKSLRYVEDAAEN
JGI12074J15755_1007019	JGI12074J15755_10070192	F071316	NFIKTFFLSLPVLFLMKFDLLSFRSKKTKLKKNKNFIWYLRHDD*
JGI12074J15755_1007063	JGI12074J15755_10070632	F050662	NANEIFERIKSAGGEYALFAVEDTGYEKLQINFTDIRNKLAEQRQLLLAYREYYEPVVKSE*
JGI12074J15755_1007965	JGI12074J15755_10079651	F074478	NGSKEEPIKELKEVVSDSFDEAMFNTKSDNLPLLLKAWKALEEKVLLEDKEKLKVN*
JGI12074J15755_1008058	JGI12074J15755_10080581	F063767	GCSLGDDRPLFCKLYPLVENKSNRLVINNWGYIHCPKPMNYELDKVVDGKYHYKIKPEVRKHNKREELILDDKIENVVKQIWLQSKNSIIQRYGQEFYERIKMEMKQTIKHEFF*
JGI12074J15755_1009323	JGI12074J15755_10093231	F086697	QDLFNKYTKLWYENNLDDTTKSDDELNNEALRLLKYDTLGFNLINGSKEEPIKELKEVVSDSFDEAMFNTKSDNLPLLLKAWKAFEEKALLEEKKKLKVH*
JGI12074J15755_1009542	JGI12074J15755_10095422	F007138	MTNKTITLTEPYPSDFKPDMIVEGIQQYFESHSLYVARMLSGTKWGYHEKYPEDLIVWNANVLIPDYGKVWYGDLNLTQDYILLKSIAESLDTTLYILWEMDARFGEEMKPIDELIKKAAWNTDELKPTKEWYKNKMDKKYNG*
JGI12074J15755_1009879	JGI12074J15755_10098792	F090499	VGELNXLPVTEVLENVKKSHANKYVRAIETLKGICDHNAGWIKENQ*
JGI12074J15755_1010561	JGI12074J15755_10105611	F019844	VLRNLKNLINRLFGFKDKKINKPKLTLVVNNTDNQEGKSENDYFSYHEEHFTFEEDISEEYRNELKNHLKESLENKVHPWDFEKNLDFKLKEPDKIYYLFMYYLMYIDIFEQDLFNKYTKLWYENNLDDTTKSDDEINNAALRLLKYDILGFNLINGSKEEPIKELKEV
JGI12074J15755_1010647	JGI12074J15755_10106472	F065937	MFNKLLAAAAAMLLSATTFAGISLTGEYEGTLDSHGTYTQDIETTLKGTSGNSAVTVVLDEAFEVDDIYVETTVGVLTFKLGDYSGSDPDVTKLGVTATVGDYTVGLNQESGGSTTIDVGANLGG
JGI12074J15755_1011270	JGI12074J15755_10112701	F012582	KHLSATMIHWAEENKIRTKRNGNYEIPQRNGIDWKFDFKFVTKLDSMLADGLDDKLKKSEMKMCNELYSYYSQCYMMK*
JGI12074J15755_1013289	JGI12074J15755_10132891	F013468	MPSTHTWNALKQVGLIPKQNKILEGNINPQLKIELTGVEDETV*