3300001582: Marine microbial communities from the Deep Pacific Ocean - MP1788

Overview

Basic Information

• IMG/M Taxon OID: 3300001582
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054431 | Ga0000772
• Sample Name: Marine microbial communities from the Deep Pacific Ocean - MP1788
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50860644
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): 9.22
  • Long. (^o): -163.53
  • Alt. (m): N/A
  • Depth (m): 3818.06

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085813	Metagenome	111	N
F090504	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI11905J15746_1008845	Not Available	832
JGI11905J15746_1011750	Not Available	700

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI11905J15746_1008845	JGI11905J15746_10088452	F090504	MMVVFLVLTIIIFGLILPYWAGVIAKRKGKSFVLWCILQVLFLFPIVLIAFHSPVEKKK*
JGI11905J15746_1011750	JGI11905J15746_10117502	F085813	MDQFEIIWILVTVIGALNYGFNAYQKGFRRLLKWDVISLIILDTLMFVPLSLIF*