3300001581: Marine microbial communities from the Deep Atlantic Ocean - MP0759

Overview

Basic Information

• IMG/M Taxon OID: 3300001581
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0053865 | Ga0000798
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0759
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 45491639
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: West of Cape Town, South Africa, South Atlantic Ocean
• Coordinates
  • Lat. (^o): -32.81
  • Long. (^o): 12.77
  • Alt. (m): N/A
  • Depth (m): 3901.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027993	Metagenome	193	Y
F034217	Metagenome	175	N
F041257	Metagenome / Metatranscriptome	160	N
F066848	Metagenome / Metatranscriptome	126	N
F082562	Metagenome	113	N
F085813	Metagenome	111	N
F089571	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI11757J15750_1000777	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	5659
JGI11757J15750_1001562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	3510
JGI11757J15750_1003015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2068
JGI11757J15750_1005295	Not Available	1265
JGI11757J15750_1007941	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	889
JGI11757J15750_1010488	Not Available	714
JGI11757J15750_1014598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	564

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI11757J15750_1000777	JGI11757J15750_10007773	F089571	MIKKERKMYQNIIVLMIPILFLIAPAKSQHVKQKYATTEMDEKVILNENGTWEYLGEDKQDYTLKKVPPKIYNYDSTPQTWEERTEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIPEDFRRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNSEYDNLLNHIDKLEGYGPIKISYDMGNGIIESITFEEIWLKINPYNGDPAHLLRKINLLKN*
JGI11757J15750_1001562	JGI11757J15750_10015625	F027993	MIAKAASKQVAELTKAAKTKPNLRPILPIIFAAKIVKIAVPTTDKAVGNVDKDFIEVICDPXIPLKKTVIXXAVNPKT*
JGI11757J15750_1003015	JGI11757J15750_10030152	F085813	LNYGLNAYQKGFRRLLKWDVIFLIVLNTLMFVPLSLIVGL*
JGI11757J15750_1005295	JGI11757J15750_10052951	F034217	TIPVITITTAVMADHTPNAAKSNSAMFYLVNRDKINTLEIS*
JGI11757J15750_1007941	JGI11757J15750_10079412	F082562	MNNIILMKTIILGILITLSTNLFAQTNDSLRNYFLDIELSIIHPLLGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRICLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI*
JGI11757J15750_1010488	JGI11757J15750_10104881	F041257	MQEFKPNYRPLGSEEDDVVDPRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFDGFTNRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEERTIRMVA
JGI11757J15750_1014598	JGI11757J15750_10145982	F066848	MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDYVLRTVLKGARQIAADQRLPVDPVAKG