3300001576: Marine microbial communities from the Deep Pacific Ocean - MP2053

Overview

Basic Information

• IMG/M Taxon OID: 3300001576
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054582 | Ga0000766
• Sample Name: Marine microbial communities from the Deep Pacific Ocean - MP2053
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20711755
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: West of Cabo San Lucas, Mexico, North Pacific Ocean
• Coordinates
  • Lat. (^o): 14.53
  • Long. (^o): -118.77
  • Alt. (m): N/A
  • Depth (m): 4004.97

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012354	Metagenome	281	Y
F020717	Metagenome / Metatranscriptome	222	Y
F085813	Metagenome	111	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12145J15760_101287	Not Available	1364
JGI12145J15760_102804	All Organisms → cellular organisms → Bacteria	903
JGI12145J15760_102839	Not Available	898

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12145J15760_101287	JGI12145J15760_1012875	F012354	NPVANIPKPIPIAKKAIDILNNVGLPVFLNPTYEIVPITTPTKSPTKFRIISRKNSNYADSVTVLNKVSEQVF*
JGI12145J15760_102804	JGI12145J15760_1028042	F085813	MDQIEIIWILVTVIGALNYGLNAYQKGFRRLLKWDVIFLIVLNTLMFVPLSLIVGL*
JGI12145J15760_102839	JGI12145J15760_1028391	F020717	VACTRFLALLETTQCWDFLRAHHILHENKDIWCFRDLNEQKDISISALILMLSEN*