3300001525: Chimp virome sample 4

Overview

Basic Information

• IMG/M Taxon OID: 3300001525
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095260 | Gp0057791 | Ga0012980
• Sample Name: Chimp virome sample 4
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 304720290
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Primate Fecal Viral Communities From Gombe National Park, Tanzania
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Primate Fecal → Primate Fecal Viral Communities From Gombe National Park, Tanzania

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Gombe National Park, Tanzania
• Coordinates
  • Lat. (^o): -4.4
  • Long. (^o): 29.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029589	Metagenome / Metatranscriptome	188	Y
F056682	Metagenome	137	Y
F076190	Metagenome	118	Y
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
chfec4_10000407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	29586
chfec4_10012629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2862
chfec4_10067737	Not Available	852
chfec4_10124865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	558
chfec4_10136984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
chfec4_10000407	chfec4_1000040726	F092227	MNEQKRKRILRVGCLLLAGVFLLSVLGSVILMLLV*
chfec4_10012629	chfec4_100126297	F076190	VRTAGGSITTPAGNAPTAASRVSGRAWWLARITAPNGLKSVKIRVGKPQNNPLYPHFQREPL*
chfec4_10067737	chfec4_100677372	F029589	MKEYEIVIKCTNACAGSSRPQTFFEEAELENPAGYIREKHGRDFEKFQEEVLPDGRIVYSWDNGSVAYHYEFTEL*
chfec4_10124865	chfec4_101248652	F092227	MNEQKHKRWLRIGCLILAGVFALSLLSSVIMMLLF*
chfec4_10136984	chfec4_101369842	F056682	MKTLSRAGKVANQPIGQGKMYSASFRVFLLKNHITFPFQELGKIYKNQEVL*