3300001484: Sheep rumen microbial communities from New Zealand - Rank12_low

Overview

Basic Information

• IMG/M Taxon OID: 3300001484
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053113 | Gp0054959 | Ga0012461
• Sample Name: Sheep rumen microbial communities from New Zealand - Rank12_low
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 456493960
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sheep Rumen Microbial Communities From New Zealand From High And Low Methane Emitting Sheep
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Sheep Rumen Microbial Communities From New Zealand From High And Low Methane Emitting Sheep

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Palmerston North, New Zealand
• Coordinates
  • Lat. (^o): -40.352
  • Long. (^o): 175.608
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032082	Metagenome / Metatranscriptome	181	N
F061341	Metagenome / Metatranscriptome	132	Y
F072829	Metagenome / Metatranscriptome	121	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
rank12_10117891	All Organisms → Viruses → Predicted Viral	1412
rank12_10449126	Not Available	502
rank12_10497501	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
rank12_10117891	rank12_101178915	F061341	MAKKKNITVGTIKGIDIIRQTKPMQDIPFRTGVYTDKRKKREKINKNRLDKWL*
rank12_10449126	rank12_104491261	F032082	MNNTSELSTTIKTSTKPGKLTKEETMLRSYNETFYSSLKNLSFIKDPLPIEEKLMYHFEQNDSASVSSTIGQLESTLQELLIKNKEIKEKIIELNGEIQTLKADINKINSNFAPYGPQIKILSKAIKEFVEKQKLENYRLKEEINLLEKEKNEIQQGIYDSLGYLNK
rank12_10497501	rank12_104975012	F072829	MENFYNQLIDEYFKRHPDAGLAWWMLPLNEQPEGFKQEMYDIMWDLTHKEEANG*