3300001455: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2

Overview

Basic Information

• IMG/M Taxon OID: 3300001455
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0053798 | Ga0002402
• Sample Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12215134
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002875	Metagenome / Metatranscriptome	524	Y
F005285	Metagenome / Metatranscriptome	406	Y
F016023	Metagenome / Metatranscriptome	250	Y
F033929	Metagenome / Metatranscriptome	176	Y
F053353	Metagenome / Metatranscriptome	141	N
F055043	Metagenome / Metatranscriptome	139	Y
F081571	Metagenome / Metatranscriptome	114	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI11848J15208_100013	Not Available	2658
JGI11848J15208_100430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1042
JGI11848J15208_100926	All Organisms → cellular organisms → Bacteria	741
JGI11848J15208_101249	All Organisms → cellular organisms → Bacteria → Proteobacteria	664
JGI11848J15208_101916	All Organisms → cellular organisms → Bacteria	576
JGI11848J15208_102673	All Organisms → cellular organisms → Bacteria	513
JGI11848J15208_102708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI11848J15208_100013	JGI11848J15208_1000132	F033929	MPRGILSRRSDTGQTSWGKLSRLPRTVAESTLRIFDGYGLRGTLPARPMLAPCIRFLSIDSRVCSMLPSDTASRR*
JGI11848J15208_100430	JGI11848J15208_1004302	F002875	MRGLKVAILMAATAWAGTAMSADDAFRQAVNYVFSGNVAGKTPQLLSSIVDETKCIISVEMPGNSWLYYLKEVRPDSIIIDENNGKISFEGDSTIVEHTFESLPRVDKDNKISITLRGEVERTRDALKLIFTKYCLPKSG*
JGI11848J15208_100926	JGI11848J15208_1009261	F005285	LESTVSRRIGMHGVSGDGMARRWSEMNQGSRTGKGTAFMAARGPEELSPGGDRAFVVARKRGNARGAKGGRKVEA*
JGI11848J15208_101249	JGI11848J15208_1012491	F055043	RSDAAKAQLEIEPLTADEIDRLLATAYSAPKPIVQKAAALVEPSNRAP*
JGI11848J15208_101916	JGI11848J15208_1019162	F016023	MTDRIIVATFNDTNAAYDAASAIKGLKDAGVADFKLKTGVMIKKDDRGNVVLLESK
JGI11848J15208_102673	JGI11848J15208_1026731	F053353	QILRKVARSTELSRGDIATEAKLAVGYYVYTISVAGVVRYIGKGKGLRLYSHMKEVRSRLKRDFRVQSIGSILQRNLTKAFLSEAQVTEQVLIDDLTEKAAYKLEYDKLREYVFAGKGDQLWNVIPASIQTPQEIQAYTERLQRNLNSRDRWVRTLSAMTLEALRGGQHQH
JGI11848J15208_102708	JGI11848J15208_1027081	F081571	KRVFVESSGRLWGLMLEKAVHCLGILHYGWAWNLASKMDGTSSEAKPTALGYVFVPWFSTGTNSARDFR*