3300001428: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-092012

Overview

Basic Information

• IMG/M Taxon OID: 3300001428
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0056274 | Ga0003487
• Sample Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-092012
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 63437055
• Sequencing Scaffolds: 32
• Novel Protein Genes: 36
• Associated Families: 35

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria → Candidatus Muproteobacteria bacterium RBG_16_65_31	1
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia dioxanivorans	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → polar → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001849	Metagenome / Metatranscriptome	626	Y
F004441	Metagenome / Metatranscriptome	438	Y
F005728	Metagenome / Metatranscriptome	392	Y
F013480	Metagenome / Metatranscriptome	271	Y
F017249	Metagenome	242	Y
F021887	Metagenome	217	Y
F022443	Metagenome / Metatranscriptome	214	Y
F024681	Metagenome	205	Y
F025880	Metagenome / Metatranscriptome	200	Y
F026443	Metagenome	198	Y
F027693	Metagenome	194	Y
F029177	Metagenome / Metatranscriptome	189	Y
F031302	Metagenome / Metatranscriptome	183	Y
F033844	Metagenome / Metatranscriptome	176	Y
F035555	Metagenome / Metatranscriptome	172	Y
F036991	Metagenome / Metatranscriptome	169	Y
F037489	Metagenome / Metatranscriptome	168	Y
F039195	Metagenome	164	Y
F040400	Metagenome	162	N
F047997	Metagenome	149	Y
F050031	Metagenome	146	N
F050766	Metagenome	145	Y
F051569	Metagenome	144	Y
F073982	Metagenome / Metatranscriptome	120	N
F075447	Metagenome	119	Y
F079367	Metagenome	116	Y
F084901	Metagenome	112	N
F091040	Metagenome / Metatranscriptome	108	Y
F092956	Metagenome	107	Y
F096256	Metagenome	105	N
F100038	Metagenome	103	Y
F100039	Metagenome / Metatranscriptome	103	Y
F102124	Metagenome / Metatranscriptome	102	N
F104083	Metagenome	101	Y
F104110	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20201J14949_1000590	Not Available	3137
JGI20201J14949_1002224	Not Available	1958
JGI20201J14949_1002355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Clavibacter → Clavibacter michiganensis	1917
JGI20201J14949_1002807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1788
JGI20201J14949_1003022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1735
JGI20201J14949_1003325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria → Candidatus Muproteobacteria bacterium RBG_16_65_31	1668
JGI20201J14949_1004216	All Organisms → cellular organisms → Bacteria	1511
JGI20201J14949_1007296	All Organisms → cellular organisms → Bacteria	1156
JGI20201J14949_1007374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1150
JGI20201J14949_1007712	Not Available	1123
JGI20201J14949_1008765	Not Available	1051
JGI20201J14949_1011470	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	906
JGI20201J14949_1013120	Not Available	838
JGI20201J14949_1015061	Not Available	773
JGI20201J14949_1015901	Not Available	749
JGI20201J14949_1017361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia dioxanivorans	709
JGI20201J14949_1018448	All Organisms → cellular organisms → Bacteria	683
JGI20201J14949_1019164	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	667
JGI20201J14949_1019350	Not Available	663
JGI20201J14949_1019950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	651
JGI20201J14949_1020242	Not Available	645
JGI20201J14949_1020997	Not Available	632
JGI20201J14949_1022299	All Organisms → cellular organisms → Bacteria	611
JGI20201J14949_1022854	All Organisms → cellular organisms → Bacteria	602
JGI20201J14949_1023390	Not Available	594
JGI20201J14949_1024068	All Organisms → cellular organisms → Bacteria	584
JGI20201J14949_1024110	Not Available	583
JGI20201J14949_1024746	Not Available	575
JGI20201J14949_1026232	Not Available	556
JGI20201J14949_1026866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547
JGI20201J14949_1029438	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518
JGI20201J14949_1029914	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20201J14949_1000590	JGI20201J14949_10005904	F096256	MHTYFHLVCGGEAVHMTSRKLQAVLAAAIVATVLASGCLSSLTSRPSPTATPQDLSVSYDASFVLSGWRAISKFTQVTPKTYVGTYAEEKGQSWNFTVQLFSSENTSYSRYFELLKKKSDEGYVKTNESKIALGTGQTVFGRIDEKWYGYKANDSENPALYALLFGYDENAASWVVATVASGAIITTKTTAALS*
JGI20201J14949_1001234	JGI20201J14949_10012343	F104110	MYLGKDVTTEDDMELGKVSDVSISSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLSQSEEDRIITDQALID*
JGI20201J14949_1002224	JGI20201J14949_10022243	F024681	MRMSTFMNWLFHRGRTDGGSGEVTRTSRPLLEEDAGQERRMASLTAEGGPGTGLTQPSGGPLFIGFEALARRLSALLEGLTPVHEKAALVSFVGTGITDPNRYEDAAAAFKQLRLMAPAHEGALVQVFRHQLREESQGNDFLYVHFAGDPLSFGFLICALTGGGLMAGWKLG*
JGI20201J14949_1002355	JGI20201J14949_10023551	F104083	ARPLFVDFEALARRQNALFEGLTPVHEKAALVSFIGTGITDPNRYENASAAFNQLRLMAPTHEGALIQVFTHKLREESKGSDFLYLHLAGDPLSFGFLICALTGGGLMAGWKLS*
JGI20201J14949_1002807	JGI20201J14949_10028072	F039195	MEVRTVVFASVLGLLALFCFLSILLSGDDSEPQVDPRDNLPIWARFGTR*
JGI20201J14949_1003022	JGI20201J14949_10030221	F026443	MSYGLLQRWRASARSLIVGGRDGLPRRTFRFADIERGWRVQDSDETSLGTVVSSGEILLTVSRGLLSSTLYLPPSAVAEVHEGVVRLNVTSRWVEAQGWDRAGSRK*
JGI20201J14949_1003325	JGI20201J14949_10033251	F027693	MSSSDQPTLGEAILAQVRGVKSKRSPRPADFVKDFVRHPGASRPAGSVALDFTCDTHDGRLMRLWMCPHSAGVTFEGEGRKGAWDSDDSGCGAVVVTCTRPGCRQSAHLTNDWLVARLR
JGI20201J14949_1004216	JGI20201J14949_10042162	F031302	MSSSTASAAHQDRPEINPDLQDVVHTVHHEFDEKLDPQAVDECLGRVAAQFDEATVRSFVPLLVRRYVNDELHERLAHA*
JGI20201J14949_1007296	JGI20201J14949_10072962	F036991	VSEASNMSGIVARNLSGLIWSPMEVPDETDRDVTGDPGDAI*
JGI20201J14949_1007374	JGI20201J14949_10073741	F100039	MVDIVDWARDLLVSRGALVETEEAGALRALLPAELAAALESREWLSLRFGGGAGASDENEWLDRLSRLLPPDARVVSARLRRPVLVPPVDATGALDRGLALQNGICRVIEDYQQTARYYFFGFHYTIESDETSLGVVTVCLNASARTLVPQPEFLAKAVKDDLEEDPQPAIPRDELAQLFPIALRGVQPEIRRLAAAIEQSANRRLARDSERIDSYYKDLL
JGI20201J14949_1007712	JGI20201J14949_10077121	F102124	VTYAERVTAAELVGTPHGRRPVADKGPPDEHVPYPATATAAAFRTATQLFLDQLKQLTDMTQAAGTTPWTDTAGRPGTELAREVLEHMRSMAEHTPAPTAHLDTFLQELRAKRALIGALQLQLTAFEQQMDILEQALQPLHEWGQEWSTVQRAITDTFVPPDAQLDP*
JGI20201J14949_1008765	JGI20201J14949_10087652	F092956	MPSXVNWMHDSDNRMLARYQHLHKSALKVKASQLQKIQRTETREVCISVLLKAVVICNDTLKEMGFEDYEAGHEQSLLEKSS*
JGI20201J14949_1010539	JGI20201J14949_10105392	F091040	MALFVVLALFTVLAILGLWLGADSRVPGGWTPTDPEDKLWPDRPETPDLPAGPAK*
JGI20201J14949_1011470	JGI20201J14949_10114701	F004441	MHSQPGLRAAGFLVTFILLPFLPADAATPIKIDTKNLLVTVDAAACRWSAEVKGTPMRLNNVYFLPGDDHSGWTVTPSVNNNDSNNLGSFSTVTLRGRKPGQLDFEYQISVSKTNTDILVSLGRTNKTGKAVDVDDMDYFVSRDVRLGSTNDRWIALGTHSRNRD
JGI20201J14949_1013120	JGI20201J14949_10131202	F051569	MTIITESAALTGRLSVNTTYTAAPLDQVNTWVSQWGTSLQVLGGTILAICMVLVGIKLGAKSVASNGASTGHREAVGAIFGLVIAGVLIGAALIIVPLLVGVGSNSGTTPPAAPAPAATAGG*
JGI20201J14949_1014057	JGI20201J14949_10140572	F040400	GGGVVGTDALDPQVIARAELRLELREIARRAGRLDAVRAIGREVERWAGSAQHWFPAGVLGSSELATSIGPRLAALPVVLDAGYGVILADQLREAELALLLGPWRGLAGDPFDPASQFGDGDPDHERTPFGQGDEDEPDGGEDPPG*
JGI20201J14949_1015061	JGI20201J14949_10150611	F084901	FWKSPNMETHRKTYYSTDRREQYKKRAFEADLLKLAVAIVAELLIFFVWFDGPARERYEILVHIALPICIVLPILNYRYLIVVPFIAFLPDVARAIGIDISHSLVILPLVFLAAFVPFIRRPKTALVAGYAACAIWASHLIVDARKYTPIQNVGGYLWSDLVLYALLLTVIGFLLLQLLRFSETNEMARSYD*
JGI20201J14949_1015901	JGI20201J14949_10159011	F079367	MPINLDKVAAKIKKMLTRGDVARDAAWYKDNIAWWMGRYETLITTEAEAVVRKAMAKLNQAVALRDEGINLVEQLDRDIIEAEHEVKRLGGDAFIENSEPMIKELKVYFDNLYESLKRPQSEKVEK*
JGI20201J14949_1017361	JGI20201J14949_10173611	F021887	MVTQMDGAVEPDSLAAFRRRRDGRDDLPALPLRPLIAEYTATFGSTWRPVTRRKHRDDFARLIAWLEANGKPVTTGSLDFMTLVDYVGYLRVRPKVSGVWRGGPDALGRSLRHAPVQTLSANSVNAYVRPLRSLVIWLVDEGLISQDPFRRSHRRAALNPLLPSEETPTKSATLDDIRALEAGCAGDRPLDLRDRAIVSILKTT
JGI20201J14949_1018448	JGI20201J14949_10184482	F005728	LSRYRFEAYLDKVFDFSHLVEALPEGRQAPRHPWHKVFDAVFLAAAMQIPSLLQIEAECRRGALAQRIGPISDDTIGYALQRQSPEPVFALGCDIVRR
JGI20201J14949_1019164	JGI20201J14949_10191641	F001849	KNERHAMHLLFSPVLASALYIGGGSVGLLLVIIVVVILLRR*
JGI20201J14949_1019350	JGI20201J14949_10193502	F075447	LLNDSRLYAAASTSTLLAGHATSDSKQAWAEMTATLSVELEGRVPPGLVAEIVRAVLDESRRASQDRALELTMFEARKRLERFIRARSSR*
JGI20201J14949_1019950	JGI20201J14949_10199502	F050766	MEKLHSELGVIADLSALEMRALATAKVAAKAIKDVEIDVLQNAASPLDEAAEVGGGSNVPNGAGWRVSVAFEVICKRINVWSADSAAQAPQRLGRGEKRF*
JGI20201J14949_1020242	JGI20201J14949_10202422	F084901	AFEADLLKLVIAVVAELVIFFIWFDGPARERYEILVHIALPVCILLPILNYRYLIVVPFIAFLPDVGRAIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKYAIIENVDGYLWNNMVLYALLLTLIGFLLVQLLRFSDTNKMAEEL*
JGI20201J14949_1020769	JGI20201J14949_10207691	F073982	VAFDQSGPRWLGISDLIAEPEGPTFISYKVARSRLDRLRFVTHDP
JGI20201J14949_1020997	JGI20201J14949_10209972	F047997	PAGPVQTSQSHVTGGKALTGNDDQVIYSDDYTRLFTYQSRQFTAGDLSLKAINGVQWNAALPAAVIAVAATVVTAIGLWVVGFSPWWSALLFPVPALVVYVRMAKDRAGGLTESEKFRLAWNYRYSQPREVLGLAENTEPSDFAWDVIFWLPPAQPSAIGAPR*
JGI20201J14949_1022299	JGI20201J14949_10222991	F017249	HSLSRRTRDLLAGDLGAHRDLSVDPDPEPEATRAGRPPVIEPPAASDYKPADAAAAWDRRRQDLQDLAGIIDVLTDVERRADELNRRAAELVEGWL*
JGI20201J14949_1022854	JGI20201J14949_10228541	F037489	EAEQLVAEYEASGLSRVDFCHERGLSLATLARYRKRHSQANAAPGVRWMEVEVSGNGPAPESGGASGLTVALKSGRRIEVARRFDARTLAQLLAVLERV*
JGI20201J14949_1023390	JGI20201J14949_10233901	F025880	MDHVTIEIGLGRFEAFTIIGARHDSSVQESVAGALGWLSGRFIASVMSTEVEVRNCTAAIFDVDAEEVMVQWHGSSDELADL
JGI20201J14949_1024068	JGI20201J14949_10240682	F035555	VHPMRSQLAFDLDDAAPAPPPVIGRPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ*
JGI20201J14949_1024110	JGI20201J14949_10241101	F033844	MPTPYFPAFRSRLASLGRRTTQTVRQTTLAQFQEHLRDFLPAPLLSAEDDGPNSRER
JGI20201J14949_1024746	JGI20201J14949_10247461	F050031	VSHSSERDPLLFPGPRAALLGRLSQLTVEDLHALDAAVLALRDEKPYRKRVDKGFWLAWYEGPRLKRAEGDELQDLFGHVVVAIAGGLTGLDVERFGARLGGXQQGGAIGDLMRLLRSTSADRPLQGAAIGLIEDAVAPWDPRLAIVACWNVACAATLRKYLPVEVVEVLEGAWRRAIGEPPA*
JGI20201J14949_1026232	JGI20201J14949_10262322	F100038	MEPEPPGTMGLFDRQGRRPIAVLVTSDGRRVNVPLDDLETDSGRVSLRSLLLSLLGLLGLISGSRQEPGGRRTER*
JGI20201J14949_1026866	JGI20201J14949_10268662	F029177	PLYAAGLGTVSFCPTPTYLLQAGDAHRPHQLDLDKLDKRLMYGQILALAQTVEALDAAPAAAL*
JGI20201J14949_1029438	JGI20201J14949_10294381	F022443	NEFVQVYTAEQTNTPVASIYVYGQIMGEVSLSPEALYWSIPNTTNTPAERPEAQITQRVTIRSAAGQTIELKNPQSSIKGIKVELVSKEAGKVYELVARLDEVPASTVSGNVSFETSVAAQPRIEVPVIVNVFKP*
JGI20201J14949_1029914	JGI20201J14949_10299141	F013480	MKRIVLLLVXLFVVXLSTGCGPSDAEKRAXQVAQAKDDALKLRQQLAQAKSGADAENVRQQIMKVLSDASLTVESIHFTEAELKDYVKAASAAEKPAPPPPKKAKAVRHTKARRKG*