3300001422: Oil sands microbial communities from Horse River, Alberta, Canada - outcrops

Overview

Basic Information

• IMG/M Taxon OID: 3300001422
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047444 | Gp0055927 | Ga0012417
• Sample Name: Oil sands microbial communities from Horse River, Alberta, Canada - outcrops
• Sequencing Status: Permanent Draft
• Sequencing Center: McGill University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23719607
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium simiae complex → Mycobacterium parascrofulaceum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrocarbon Resource Environments Microbial Communities From Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Sand → Oil-Contaminated → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → outcrop → sand
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Horse River, Fort McMurray, Alberta, Canada
• Coordinates
  • Lat. (^o): 56.70268
  • Long. (^o): -111.398858
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009302	Metagenome / Metatranscriptome	320	Y
F017704	Metagenome / Metatranscriptome	239	Y
F025881	Metagenome / Metatranscriptome	200	Y
F044211	Metagenome / Metatranscriptome	155	Y
F066257	Metagenome / Metatranscriptome	127	Y
F087928	Metagenome / Metatranscriptome	110	Y
F102104	Metagenome / Metatranscriptome	102	Y
F103709	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Draft_100086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	13892
Draft_100252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium simiae complex → Mycobacterium parascrofulaceum	8736
Draft_100643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	5218
Draft_100759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	4791
Draft_102489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2334
Draft_103522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1925
Draft_104519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1656
Draft_107125	All Organisms → cellular organisms → Bacteria	1167

Sequences

Scaffold ID	Protein ID	Family	Sequence
Draft_100086	Draft_10008614	F066257	MTYPAVDNLPEEATSTLLGVCAQLSRSRHPGLARWASSVSDALLVRLVSVTTGVRVDGNGNKPCPLKTLAAAELEGLHALLFAGAEASDDEWVVDWCTRMNGLILADFCRRELEQLAIDAQANAILAEERRLACLALQAPDLRVVSRRSAV*
Draft_100252	Draft_1002526	F087928	VPSTSHLAELEVESTDVVTAWSALEPVVAWCAETLGLPATKSDYHVGHPDDQGTVAGAGLSDCLDRVESPTSISVTYTMSSDSGGDPRSVELRIMRYRRFKELNVHLRVDGPANADVGLFRAHPEDGRTGD*
Draft_100643	Draft_1006432	F044211	MTHLSDGTVATDIDAHGDNAALSAHGYTIRHIETYHRDTDMSCIVWDAPAITEADLPF*
Draft_100759	Draft_1007591	F009302	VRMTTAPQTVEPTWVCDECAGEGQLAYDPEATMWVPRSATADWPADDSIAISVLDCLQCDGTGTMRLDPADGNRPTRSAR*
Draft_102489	Draft_1024891	F017704	MAVRAQRALMGNHCLVLWEVWLVSPLEMCGQEVSRVRAHRRVSRTSPPWSSVRPEGRDHLVGGSPTRAMVGWPGSWQAVRSGNWPCRSPATNLALGGGANRRAVTCVKPEQASKGKLWTPTRPKIGEGSTVWGSSRQTHLERSTGVRGTARRDRGSRKRGRSVRDGGSGLNDAEGHWSARKSDRVVVPPKPGNSGGGKDPDFWYVFEANEVR*
Draft_103522	Draft_1035223	F103709	VEWGSNRQMHPFWSIGVVGTACQKGEPGNWGRPVVGEGSGLDVVAERRLWRVSDRVIVLLRLGNASGGKDPDFWCAFEGVEDW*
Draft_104519	Draft_1045192	F102104	MKNMILAAFAALTLGVAIAPVANAASFGSSVAGDSQATQMQRTGSYSR*
Draft_107125	Draft_1071251	F025881	MATAPSVIEVTAGEIAAELKRRGISSDERVTLTIEPERELIPGRRESRTKVVAAGLSDADIDRLIKQAQHEVEPRIA*